YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108709554
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPWCPADST KPVFVGIYGA VIGGFAVSAL FFLLSSFSSL AAPPLPIPPA SAAAANLSGA  60
   61 VSGVAQPETM YNRPIWKPPP RRERMPAPRA FRLTREMVGA RARGGAIVVT FGNHAFLDFI 120
  121 LTWVRHLTDL GVDSLLVGAM DTKLLRELYL RGVPVFDMGS RMATEDAVWG SPTFHKMGRE 180
  181 KVLLINALLP FGYELLMCDT DMVWLKNPLP YLARYPDADL LTSSDQVIPT VTDDSLENWR 240
  241 EVTGAYNIGI FHWRPTEPAK RLAKDWKDLL LSDDTLWDQN AFNDLIHKKF GYPVVGEDEL 300
  301 VYSYDGKLKL GVLPASIFCS GHTYFVQGMY QQLRLEPYAV HTTFQYAGTV GKRHRLREAM 360
  361 LFFDQPSYYD SPGGFLSFRP NIPKSLLLDG AHTVKSHFAL VNYQLKQIRT ALAIASLLKR 420
  421 TLVMPPLWCR LDRMWFGHPG VLEGTMTRQP FLCPMDHVFE VHVMLKDLPK EEFGPHIDFR 480
  481 EYSFLENPSL PKQVKESFLE VELCNEHSTR CSTTNRTNKG APVLLPRNST EQTLLDIFKP 540
  541 YKDIKILQFS SMVNAFGGFS DAAVDTKFRN RVKRYVGLWC CVQLREIGHI YYDMYWDEKP 600
  601 GWKPLPPQTK VEDHPPWLEV QE

Type	Start	End	Confidence
Cytoplasmic	1	13	0.79
Transmembrane Helix	14	34	0.92
Non-Cytoplasmic	35	51	0.64
Transmembrane Helix	52	67	0.50
Cytoplasmic	68	98	0.56
Transmembrane Helix	99	117	0.52
Non-Cytoplasmic	118	622	0.96