YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5404-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.77
Transmembrane Helix	45	60	0.38
Non-Cytoplasmic	61	66	0.39
Transmembrane Helix	67	90	0.69
Cytoplasmic	91	93	0.42
Transmembrane Helix	94	126	0.63
Non-Cytoplasmic	127	137	0.49
Transmembrane Helix	138	161	0.80
Cytoplasmic	162	168	0.52
Transmembrane Helix	169	197	0.60
Non-Cytoplasmic	198	214	0.63
Transmembrane Helix	215	234	0.93
Cytoplasmic	235	254	0.87
Transmembrane Helix	255	274	0.92
Non-Cytoplasmic	275	317	0.72
Transmembrane Helix	318	337	0.83
Cytoplasmic	338	387	0.62
Transmembrane Helix	388	404	0.91
Non-Cytoplasmic	405	413	0.61
Transmembrane Helix	414	432	0.92
Cytoplasmic	433	444	0.88
Transmembrane Helix	445	476	0.85
Non-Cytoplasmic	477	627	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPQLETEAE ALEKATARAL LPGAISKPAS EAGKAPRMNK WKRRLHRHVP VFQWLPLYST  60
   61 EWGIDDFIAG ITLGLTIIPE SMACALLAGL PARYGLCSAF IGPLIYMVFG SIDKVIIGPT 120
  121 SLVALVSVQF TVGRPIEFAF LLTFLSGIVQ IIMGTMRMGF IFEFISMPVI KAFSSATAIL 180
  181 VIESQLKVLL GIKYLVAGLM NSVGMLSSRI EESNMADLIM GVCAIVFLLL LELLDRVANN 240
  241 EKRNKILRIF CRYLSTSRNT LIVLIAAIVS FIWIQKCGQV PYALSKNALS TLPNFTVPSF 300
  301 HIETAERNYS IWEVLKELNI GIIVIPIVGI LTNISIGKLT PKGLVDTNQE LLTVGLCNMF 360
  361 GSCVQAMPSS GAFTRYAIST ACGLRTPMAN LYLGIIVLLA LSYLSPYFNY IPEATLAAIL 420
  421 ICSIFTLLDF KLPMRLWRDS KRDFATWLLC FCVSVLFGVE VGLFVSIVVT ALHLLFLWAR 480
  481 PEIRVKIEQL DEMQYIRVTP SNGIYFPAIN YLRERVLKAC EQADFRITVV IDGQRISGMD 540
  541 YTAAQGISKL SSDLCRQADA SSSTLLILFR FPEHLQRLID NTDNLVFCES ENKVKEFLTQ 600
  601 ESLRNGYINL KEHIRASIDL GYKIDID