YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vpr-1
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKHSLLQV TPNRELVFTG PFSDVVTSHM TLKNTSTNPV CFKVKTTAPK QYCVRPNSGL  60
   61 LKSGDSKQIT VMLQPLEGIP SDAGRHKFMV QSCVAPSEDL PDLESVWKII DPAELTYSKL 120
  121 MVTFVDKRDP ASGDDTKTFA VRNEDSFASS GQAQELGSSY SGTPSHDGTV NSLRKSLKST 180
  181 VDEKEELQKK VHGLEQEIEV MLKKNRKLQQ SHSDGALVDG AYPTLQIFLI AVAALLIGLI 240
  241 VGRLF

Type	Start	End	Confidence
Non-Cytoplasmic	1	219	0.57
Transmembrane Helix	220	242	0.85
Cytoplasmic	243	245	0.45