YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE12336
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.95
Transmembrane Helix	38	60	0.89
Non-Cytoplasmic	61	76	0.76
Transmembrane Helix	77	100	0.81
Cytoplasmic	101	108	0.59
Transmembrane Helix	109	127	0.90
Non-Cytoplasmic	128	133	0.60
Transmembrane Helix	134	156	0.88
Cytoplasmic	157	165	0.79
Transmembrane Helix	166	185	0.95
Non-Cytoplasmic	186	199	0.83
Transmembrane Helix	200	221	0.91
Cytoplasmic	222	385	0.99
Transmembrane Helix	386	406	0.94
Non-Cytoplasmic	407	423	0.86
Transmembrane Helix	424	442	0.93
Cytoplasmic	443	452	0.75
Transmembrane Helix	453	473	0.91
Non-Cytoplasmic	474	478	0.68
Transmembrane Helix	479	501	0.89
Cytoplasmic	502	512	0.83
Transmembrane Helix	513	534	0.94
Non-Cytoplasmic	535	544	0.88
Transmembrane Helix	545	566	0.93
Cytoplasmic	567	596	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDNNQQADE KAAAHQDPET VEKELEDAGF IAPPDGGYGW AIVAASFLLN MIVDGVIFTV  60
   61 GKILQPAWVH SFGISEASAA MTMSILSGCY FFAGPIASVL CNVFGCRQVA LAGSLIAALG 120
  121 FLLSISAPNI YVLYVSFGLI AGAGFGMMYL PAIVIISQYF AKKRSVATGI AVCGSGIGTT 180
  181 VFALLNDVVW DFVGGDWKQF LVYTAAVTIS GLGACILLRP LKPSKDQIEK VAKVLEDYEE 240
  241 HKEKVPESPL LSKHNTPFLS SLELHTAGKL ENGHHTGSIK SIVDAVSKEI EDLNKPLLRK 300
  301 DIFYSGSTTN IAARSRTGTM TREEAAEHQQ SLRFRGKVET PQQYLSKADL NAGDNGDVAI 360
  361 ANESKIQEIK QALKQLVDKE LLFSPSFLLL AFSGTLTLCC FYVPFIYLGN HLDKIEGLTT 420
  421 AEKSFTVSLI GVLNIVARIG CGILADRPEV SALAVNNFAL IAAGLATMTV PLYTAYWQFL 480
  481 AFCVPFSIGV ACFAALRSII VVELIGLEKL SNAFGILLTF MGVGAVVGSP LAAAMKDYTG 540
  541 NFDTSFYVMG ALMTISGAMC IPLGGLRKRE LARSDSSDAK KAIELQKLTD TQDNTN