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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: B561A_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDQRPNLLG SLVLLGFFIF FVNGEECSNS SSLIGHESEF KMLQHQLRGV FTVVDDCSFR  60
   61 VSRFDMLSGS EVHWWGAMSS DFDNMTNDGF VISDQKLNQT FKNSSFIVRL LGNVTWDKLG 120
  121 VVSVWDLPTA SDFGHVLLSN ATESDTSKAE SPPSESNDVA PGKSNNSEPF KAPTMFDNCK 180
  181 KLSDKYRLRW SLNAEKGYVD IGLEATTGLL NYMAFGWAKP NSTSNLMLNA DVVVTGIRED 240
  241 GFPFADDFYI TESSVCSVKE GTATGVCPDT VYEEADSVGS SVNNTKLVYG HRIDGVSFVR 300
  301 YRRPLNDSDN KFDFPVNSTE SLTVIWALGV IKPPDVINPY YLPVNHGGVE SENFGHFSLN 360
  361 LSDHVDECLG PLDADNKYDQ DVIIADAHAP LVVTAGPSVH YPNPPNPSKV LYINKKEAPV 420
  421 LKVERGVPVK FSIEAGHDVS FYITSDFLGG NASLRNRTET IYAGGQETHG VLSSPSELVW 480
  481 APNRNTPDQL YYHSIFQEKM GWKVQVVDGG LSDMYNNSVN LDDQQVKFFW TIVGDSISIA 540
  541 ARGEKKSGYL AIGFGSEMTN SYAYIGWFDR NGTGHVNTYW IDGESASAVH PTTENMTYVR 600
  601 CKSEEGIITL EFTRPLKPSC SHRDRPECKN MIDPTTPLKV IWAMGAKWTD GQLTERNMHS 660
  661 VTSQRPVRVM LTRGSAEADQ DLRPVLGVHG FMMFLAWGIL LPGGILSARY LKHIKGDGWF 720
  721 KIHMYLQCSG LAIVFLGLLF AVAELNGFSF SSTHVKFGFT AIVLACAQPV NAWLRPAKPA 780
  781 QGELISSKRL IWEYSHSIVG QSAVVVGVVA LFTGMKHLGE RNGTENVDGL NLALGLWVFL 840
  841 CVVTVAYLEY RERGRRRARN LSRGNWVLGN VEEDDSIDLI DSRGGFRDKD DEDRNGGRME 900
  901 IQLEPLK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle