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Protein Overview: gi|13096288, gi|...

General Information:
Name(s) found: gi|13096288 [NCBI NR]
gi|13096287 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|13096288|pdb|1HRU|B Chain B, The Structure Of The Yrdc Gene Product From E.Coli [NCBI NR]
  • gi|13096287|pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli [NCBI NR]
    • Organism: Escherichia coli
    Length: 188 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNLQRDAI AAAIDVLNEE RVIAYPTEAV FGVGCDPDSE TAVXRLLELK QRPVDKGLIL  60
   61 IAANYEQLKP YIDDTXLTDV QRETIFSRWP GPVTFVFPAP ATTPRWLTGR FDSLAVRVTD 120
  121 HPLVVALCQA YGKPLVSTSA NLSGLPPCRT VDEVRAQFGA AFPVVPGETG GRLNPSEIRD 180
  181 ALTGELFR

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|13096288, gi|... gi|134105085, gi... gi|189095939, gi...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] PSI-BLAST 54.0 Hypothetical protein YrdC

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.410994327621936 bayes_pls_golite062009
  • catalytic activity
    		•  0.343636936190038 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.280229875175501 bayes_pls_golite062009
  • RNA binding
    		•  0.119986061060909 bayes_pls_golite062009
  • protein binding
    		•  0.0580085924119811 bayes_pls_golite062009
  • DNA binding
    		•  0.0294511791688091 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle