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Protein Overview: CAP1_ARATH

General Information:
Name(s) found: CAP1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79326117|ref|NP_001031770.1| epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] [NCBI NR]
  • gi|63003776|gb|AAY25417.1| At4g32285 [Arabidopsis thaliana] [NCBI NR]
  • gi|222423887|dbj|BAH19907.1| AT4G32285 [Arabidopsis thaliana] [NCBI NR]
  • gi|18417979|ref|NP_567892.1| epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] [NCBI NR]
  • Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 [Swiss-Prot]
  • epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Epsin N-terminal homology (ENTH) domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | chr4:15586009-15587916 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At4g32285 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ENTH/ANTH/VHS superfamily protein | chr4:15586003-15587910 FORWARD LENGTH=635 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 635 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytosol [IDA]
    plasma membrane [IDA]
    Biological Process: clathrin coat assembly [IEA]
    Molecular Function: clathrin binding [IEA]
    binding [ISS]
    phospholipid binding [IEA]
    phosphatidylinositol binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSMRKAIG VVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDQSSDKY IREILSLTSL  60
   61 SRGYVHACVT SVSRRLKKTR DWIVALKALM LVHRLLNEGD PLFQEEILYA TRRGTRILNM 120
  121 SDFRDEAHSS SWDHSAFVRT YASYLDQRLE LALFERRGRN GGGSSSSHQS NGDDGYNRSR 180
  181 DDFRSPPPRT YDYETGNGFG MPKRSRSFGD VNEIGAREEK KSVTPLREMT PERIFGKMGH 240
  241 LQRLLDRFLS CRPTGLAKNS RMILIAMYPV VKESFRLYAD ICEVLAVLLD KFFDMEYTDC 300
  301 VKAFDAYASA AKQIDELIAF YHWCKDTGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRA 360
  361 KSPERKEIEA PPAPAPPVEE PVDMNEIKAL PPPENHTPPP PPAPEPKPQQ PQVTDDLVNL 420
  421 REDDVSGDDQ GNKFALALFA GPPANNGKWE AFSSDNNVTS AWQNPAAELG KADWELALVE 480
  481 TASNLEHQKA AMGGGLDPLL LNGMYDQGAV RQHVSTSELT GGSSSSVALP LPGKVNSHIL 540
  541 ALPAPDGTVQ KVNQDPFAAS LTIPPPSYVQ MAEMDKKQYL LTQEQQLWQQ YQQEGMRGQA 600
  601 SLAKMNTAQT AMPYGMPPVN GMGPSPMGYY YNNPY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..352] PSI-BLAST 93.522879 Clathrin assembly lymphoid myeloid leukaemia protein, Calm
    2 View Details [353..466] MSA 1.263996 View MSA. No confident structure predictions are available.
    3 View Details [467..635] PSI-BLAST 8.69897 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.229007340928547 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle