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Protein Overview: CLT1_ARATH

General Information:
Name(s) found: CLT1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|18419900|ref|NP_568373.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|115646756|gb|ABJ17107.1| At5g19380 [Arabidopsis thaliana] [NCBI NR]
  • Protein CLT1, chloroplastic OS=Arabidopsis thaliana GN=CLT1 PE=2 SV=1 [Swiss-Prot]
  • expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12170.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO16866.1); contains domain Multidrug resistance efflux transporter EmrE (SSF103481) | chr5:6527019-6530447 REVERS [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At5g19380 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12170.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO16866.1); contains domain Multidrug resistance efflux transporter EmrE (SSF103481) | chr5:6527019-6530447 REVERSE [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: CLT1 | CRT (chloroquine-resistance transporter)-like transporter 1 | chr5:6527017-6530445 REVERSE LENGTH=447 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g19380 OS=Arabidopsis thaliana GN=CLT1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 447 amino acids

    Gene Ontology:
    Cellular Component: plastid [IDA]
    Biological Process: defense response to oomycetes [IGI]
    response to cadmium ion [IMP]
    glutathione transport [IDA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTSSDRLI AGLTASIGSI ESRYANPAQS VSLICRNQIN GAPPIVLRSS RRSRLWLIEA  60
   61 IPPAKSWNGS NDGDEDIKKS DTRNYAIGGT GGHAVAGKDD RTMEIVIAAA TTAALGVGNR 120
  121 VLYKLALIPL KQYPFFLAQL STFGYVAVYF SILYFRYRAG IVTKEMLSVP KLPFLIVGVL 180
  181 ESLALAAGMA AASNLSGPST TVLSQTFLVW QILFSIIFLG RRYRINQILG CTLVAFGVIV 240
  241 SVASGSGAAH SFKDTGILWS LLMVFSFLLQ GADTVMKEVI FLDSKKRLKG ASLDLFVVNS 300
  301 YGSIFQVICI ALLLPFLSKL WGIPFNQLPS YIRDGGACFL NIGSRITGCE GAPLLPVMFV 360
  361 MMNMAYNISL LRLIKISSAV VSSLASTVSV PIAVYCFTLP LPYLGVASTL PRGFVAGTII 420
  421 LVVGMLLYAW TPSTNTSDSI IPSPPST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..159] deduced N/A No confident structure predictions are available.
    2 View Details [160..249] FFAS03 1.42 No description for 2i68A was found.
    3 View Details [250..447] MSA 3.616994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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