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Protein Overview: PUB21_ARATH

General Information:
Name(s) found: PUB21_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75107724|sp|Q5PNY6.1|PUB21_ARATH RecName: Full=U-box domain-containing protein 21; AltName: Full=Plant U-box protein 21 [NCBI NR]
  • gi|56790202|gb|AAW30018.1| At5g37490 [Arabidopsis thaliana] [NCBI NR]
  • gi|56381895|gb|AAV85666.1| At5g37490 [Arabidopsis thaliana] [NCBI NR]
  • gi|15240259|ref|NP_198565.1| U-box domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1 [Swiss-Prot]
  • U-box domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 U-box domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | U-box domain-containing protein | chr5:14904974-14906281 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At5g37490 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ARM repeat superfamily protein | chr5:14887744-14889051 FORWARD LENGTH=435 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 435 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: response to chitin [IEP]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS  60
   61 IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE KGSPLIQRIP TPRVPLMPCE 120
  121 VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD 180
  181 EKLTFMLNEI LSLLTWMFPI GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL 240
  241 SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV 300
  301 SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS 360
  361 MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET KEKATELLKM MNTQMKLMSD 420
  421 CVDSLKEFKY IKKPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..435] PSI-BLAST 34.69897 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle