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Protein Overview: gi|30683966, gi|...

General Information:
Name(s) found: gi|46931306 [NCBI NR]
gi|30683966 [NCBI NR]
Description(s) found:
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  • gi|46931306|gb|AAT06457.1| At3g16220 [Arabidopsis thaliana] [NCBI NR]
  • gi|30683966|ref|NP_188243.2| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • At3g16220 [Arabidopsis thaliana]gi|30683966|ref|NP_188243.2| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to RNA binding / catalytic [Arabidopsis thaliana] (TAIR:AT3G16230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45862.1); contains InterPro domain Predicted eukaryotic LigT; (InterPro:IPR009210) | chr3:5497719-549907 [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g16220 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to RNA binding / catalytic [Arabidopsis thaliana] (TAIR:AT3G16230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45862.1); contains InterPro domain Predicted eukaryotic LigT; (InterPro:IPR009210) | chr3:5497719-5499074 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Predicted eukaryotic LigT | chr3:5497713-5499068 FORWARD LENGTH=257 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g16220 OS=Arabidopsis thaliana GN=At3g16220 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 257 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: regulation of transcription [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLNHKWDR CSSSHQTPLS FKGNQKQIGQ GQREVFTHFV SLPLAIYPDL TKNIEAFQNS  60
   61 VLGNNDKDPL KFQSTLAEMG IEKSIFVTPK TFHLTVVMLK LENNESVVKA QNILQSIFSN 120
  121 VRQALKNRPV FIRLRGLECM SGSLDKTRVL YAPVEEVGRE GRLLNACHVI IDAFENVGFA 180
  181 GKDAKSRLKL HATLMNASYR KDKSKKMDTF DAREIHKEFE NKDWGTYLIR EAHISQRYKY 240
  241 DPNGYFHCCA SLPFPHK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..257] PSI-BLAST 38.522879 Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle