YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|10178126, gi|...

General Information:
Name(s) found: gi|6682281 [NCBI NR]
gi|6453715 [NCBI NR]
gi|25453531 [NCBI NR]
gi|15239141 [NCBI NR]
gi|10178126 [NCBI NR]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • gi|6682281|emb|CAB64643.1| cohesin [Arabidopsis thaliana] [NCBI NR]
  • gi|6453715|gb|AAF08981.1|AF080619_1 SYN1 splice variant 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|25453531|pir||T52571 cohesin DIF1 [validated] - Arabidopsis thaliana [NCBI NR]
  • gi|15239141|ref|NP_196168.1| SYN1 (SYNAPTIC 1) [Arabidopsis thaliana] [NCBI NR]
  • gi|10178126|dbj|BAB11538.1| SYN1 splice variant 1 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 617 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM  60
   61 GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL PKGKTHARKE AVTLPENEEA 120
  121 DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY 180
  181 HGSFQTNNET YDRFERFDIE GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP 240
  241 QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS 300
  301 WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL 360
  361 QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS SQNLDSPAEI LRTVRTGKGA 420
  421 SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM 480
  481 PNRKRPNSSP RRGLEPVAEE RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC 540
  541 NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV 600
  601 NQAEPYGDIL IARGPNM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..167] Pfam 44.070581 No description for PF04825.4 was found. No confident structure predictions are available.
    2 View Details [168..406] deduced N/A No confident structure predictions are available.
    3 View Details [407..528] deduced N/A No confident structure predictions are available.
    4 View Details [529..617] PSI-BLAST 10.39794 Sc Smc1hd:Scc1-C complex, ATPgS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.65

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle