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Protein Overview: gi|24346000, gi|...

General Information:
Name(s) found: gi|24372112 [NCBI NR]
gi|24346000 [NCBI NR]
Description(s) found:
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  • gi|24372112|ref|NP_716154.1| outer membrane efflux family protein, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346000|gb|AAN53599.1|AE015499_10 outer membrane efflux family protein, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • outer membrane efflux family protein, putative [Shewanella oneidensis MR-1]gi|24346000|gb|AAN53599.1| outer membrane efflux family protein, putative [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • outer membrane efflux family protein, putative [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 452 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transport [ISSLink to PubMed article]
    Molecular Function: efflux transmembrane transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTIIAQTL FGLLSTLVLA AGQVSQVVAA NSVLPAQAPM AVGPLLAEGD PFTPDTQASL  60
   61 NQWLPELLKQ INQLPEVQAQ IARQQQAELA IAAADRAVYN PELGLNYQNS ETDTYTVGLS 120
  121 QTLDWGDKRG VATRLAQLEA QILLADIRLE RSQMLAERLL ALAEQAQGQK ALTFAEQQLR 180
  181 FTQAQLNIAE QRFAAGDLSD VELQLLKLEL ASNTADYALA EQAALVAEGK VIELLGVDKL 240
  241 KFREFISEIG QFVSMISPKA ELPALTSAHQ QVLLAKANAL KVKADTAADP TINLGLEREG 300
  301 TDNKLGIGVA IPLQVRNNYS ELQSAADKGI AIAEQNYLAR ERVLTAKQAQ FNNALPRLLA 360
  361 RYQDWRERVE ASGSKAAKSL SEQWRSGDVS TSEYLQSRRQ LAASYLVGLN LETAIYQSWL 420
  421 TWMGDSGQLQ PFIDSFPSTS TTNAVPAKSI VR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..452] PSI-BLAST 60.221849 Crystal structure of the drug-discharge outer membrane protein, OprM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  2.73170381418733 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.34225663753298 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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