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Protein Overview: gi|24372880, gi|...

General Information:
Name(s) found: gi|24372880 [NCBI NR]
gi|24346997 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24372880|ref|NP_716922.1| chloride channel [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346997|gb|AAN54367.1|AE015574_3 chloride channel [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 574 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: chloride transport [ISSLink to PubMed article]
    Molecular Function: voltage-gated chloride channel activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLTINKAAI QDAITTAKKY LTNELRDHLS QAKISAQLCL LALLFAIFAS CVILLFRLLL  60
   61 LWANHYTQIE TLDFTGNIAD WRALLPLFGA LLIWFVAKLG SKRYNRMGIA YVLHRVKLHY 120
  121 GKIPLQSAAG QFFQALFALG TNFSVGREGP AIHLGAVSAS VLAEKFNLPD NSVRIMCASG 180
  181 IAAGIAATFN APLAAVIFVI EVIVREYKVH YFFPIMLSAI CGAVSSQLVF GNVHEFDRIQ 240
  241 VIHIPLDHYP ILAIGGIVLG CAAAFFNYAL IKVTATGQNW PLIYRLLLAG SITTLIGLIL 300
  301 PQALGTGDLA ISEAISEHPS LLLLIALLVA KIVATIAAIG LGIPGGLIGP LYGIGALIGA 360
  361 ILALVSAILF PSIAPYVGLY TVIGMTAMMG VCLSAPLAAL VALLEMTNDA SIILPAMFVT 420
  421 IPAFLIAYQG FKTNSIFFKQ LEIMGLGYKV APVNLALQKK GVRALMDKRF VIVNNNDELL 480
  481 LEVLKRAEGR PVLVRNADGV IEMLSLEMQS FDDNVTLSRH PMQGLSDTKT LDEVYSILSP 540
  541 KRSGEVFIYQ DTADNVVGVI SWSNLQQEIR SGQV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..444] PSI-BLAST 65.69897 Clc chloride channel
    2 View Details [445..574] PSI-BLAST 21.09691 No description for 2cu0A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • anion channel activity
    		•  5.09115218553708 bayes_pls_golite062009
  • chloride channel activity
    		•  5.09115218553708 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  4.78770253919702 bayes_pls_golite062009
  • voltage-gated chloride channel activity
    		•  4.5660526535211 bayes_pls_golite062009
  • voltage-gated anion channel activity
    		•  4.5660526535211 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  3.04763516868903 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.79706653769464 bayes_pls_golite062009
  • ion channel activity
    		•  1.90878598760703 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  1.80275880685569 bayes_pls_golite062009
  • channel activity
    		•  1.79378044481081 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  1.79378044481081 bayes_pls_golite062009
  • transporter activity
    		•  1.40104538148014 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.27040739514162 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  1.2655923201531 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  1.25372416980603 bayes_pls_golite062009
  • gated channel activity
    		•  1.015284876791 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.99765601803889 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle