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Protein Overview: gi|24375423, gi|...

General Information:
Name(s) found: gi|24375423 [NCBI NR]
gi|24350264 [NCBI NR]
Description(s) found:
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  • gi|24375423|ref|NP_719466.1| ribonuclease R [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350264|gb|AAN56910.1|AE015825_9 ribonuclease R [Shewanella oneidensis MR-1] [NCBI NR]
  • ribonuclease R [Shewanella oneidensis MR-1]gi|24350264|gb|AAN56910.1| ribonuclease R [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • ribonuclease R [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 808 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [ISSLink to PubMed article]
    Molecular Function: ribonuclease R activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKDPHFERE QDKYENPIPS REYIIEYLRS QKSPITRDSI AAALQIHDEE QLEALRRRLR  60
   61 AMERDGELVF TRGQSYGLPE KMDLISGTVL GHKEGYGFFK PDEGGDDLFI SNRDMLMYFH 120
  121 GDKVLAQKVG MDRKGRREAR IVRLIQPRSA AIVGRFHVDS GMAFVIADDK RITQEILIAS 180
  181 EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSAA 240
  241 IEKKLRRIPD EVTESDKVGR VDLRSLPLVT IDGEDARDFD DAVYAEVKPS GGWRLWVAIA 300
  301 DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPHVDR LCMVAEMTIS 360
  361 ARGKLSGYKF YPAVMHSHAR FTYTQVAAML EGGPIAPEHE ALFVHLQCLQ SLYLALDEQR 420
  421 AERGAIAFET IETQFIFNDQ RKIDKIVPRA RNQAHKIIEE CMILANVSAA KFVKKHKGEI 480
  481 LYRVHESPSE QKLANFKEFL AERGLSMGGG LEPTPADYQN VMLQIADRPD AELIQVMLLR 540
  541 SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKEKG EANEKWTPDG 600
  601 GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTNFGLF 660
  661 VRLNDLFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI 720
  721 DLMMLGDSGK GGRRKAAPSR DKPMTARERV NREGAKMAKT AKSSGAKSKA GSGKAASKSK 780
  781 SKAGTKPKKS VKDTAKKPKA AKRSTRKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..726] PSI-BLAST 134.0 No description for 2ix0A was found.
    2 View Details [727..808] PSI-BLAST 34.09691 No description for 2oceA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonuclease activity
    		•  2.44085181318323 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.26271782657431 bayes_pls_golite062009
  • binding
    		•  2.01819468874386 bayes_pls_golite062009
  • DNA binding
    		•  1.81052012500635 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.66506775853341 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.66506775853341 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.66324605171607 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.537716356194117 bayes_pls_golite062009
  • RNA binding
    		•  0.32835157709956 bayes_pls_golite062009
  • hydrolase activity
    		•  0.24776517765284 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.18451322024956 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.131695664491341 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0989196136046104 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle