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Protein Overview: gi|30253614, gi|...

General Information:
Name(s) found: gi|30260293 [NCBI NR]
gi|30253614 [NCBI NR]
Description(s) found:
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  • gi|30260293|ref|NP_842670.1| DNA-directed RNA polymerase subunit beta [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30253614|gb|AAP24156.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. Ames] [NCBI NR]
  • DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. Sterne]gi|50196908|ref|YP_052605.1| DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. 'Ames Ancestor']gi|30260293|ref|NP_842670.1| DNA-directed RNA polymerase, beta subu [nrdb_11152004_Chlamydomonas]
  • DNA-directed RNA polymerase, beta subunit [Bacillus anthracis str. Ames] [nr-271106-contam.fasta]
  • DNA-directed RNA polymerase beta subunit [Bacillus anthracis str. Ames] [nr-271106-contam.fasta]
    • Organism: Bacillus anthracis str. Ames
    Length: 1177 amino acids

    Gene Ontology:
    Cellular Component: cytosolic DNA-directed RNA polymerase complex [ISS]
    Biological Process: transcription [ISS]
    Molecular Function: DNA-directed RNA polymerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGQLVQYGR HRQRRSYARI SEVLELPNLI EIQTSSYQWF LDEGLREMFQ DISPIEDFTG  60
   61 NLSLEFIDYS LGEPKYSVDE CKERDVTYAA PLRVKVRLIN KETGEVKEQD VFMGDFPLMT 120
  121 ETGTFVINGA ERVIVSQLVR SPSVYYSGKV DKNGKRGFTA TVIPNRGAWL EYETDAKDVV 180
  181 YVRIDRTRKL PVTVLLRALG FGSDQEITEL LGDNEYLSNT LEKDNTDSTE KALLEIYERL 240
  241 RPGEPPTVEN AKSLLVSRFF DPKRYDLANV GRYKINKKLH IKNRLFNQRL AETLVDPETG 300
  301 EILAAEGTIL DRRTLDRILP YLEKNIGFKT AKPMGGVVEG DVELQSIKIY APESEGERVI 360
  361 NVIGNANITR DVKHITPGDI LASISYFFNL LYKVGDTDDI DHLGNRRLRS VGELLQNQFR 420
  421 IGLSRMERVV RERMSIQDTN AITPQALINI RPVIAAIKEF FGSSQLSQFM DQTNPLAELT 480
  481 HKRRLSALGP GGLTRERAGF EVRDVHYSHY GRMCPIETPE GPNIGLINSL SSFAKVNEFG 540
  541 FIETPYRRVD PETGLVTGHV DYLTADEEDN YVVAQANMKL SEEGEFLDED IVARFRGENI 600
  601 VTNKERIDYM DVSPKQVVSA ATACIPFLEN DDSNRALMGA NMQRQAVPLM NPESPIVGTG 660
  661 MEYVSAKDSG AAVICKHPGI VERVEAREVW VRRYVEVDGQ TVKGDLDRYK MQKFIRSNQG 720
  721 TCYNQRPIVS VGNEVVKGEI LADGPSMELG ELALGRNVLV GFMTWDGYNY EDAIIMSERL 780
  781 VKDDVYTSIH IEEYESEARD TKLGPEEITR DIPNVGEDAL RNLDERGIIR VGAEVKDGDL 840
  841 LVGKVTPKGV TELTAEERLL HAIFGEKARE VRDTSLRVPH GGGGIILDVK VFNREDGDEL 900
  901 PPGVNQLVRA YIVQKRKISE GDKMAGRHGN KGVISRILPE EDMPYLPDGT PIDIMLNPLG 960
  961 VPSRMNIGQV LELHLGMAAR YLGIHIATPV FDGAREEDVW GTIEEAGMAN DAKTILYDGR1020
 1021 TGEPFDNRVS VGVMYMIKLA HMVDDKLHAR STGPYSLVTQ QPLGGKAQFG GQRFGEMEVW1080
 1081 ALEAYGAAYT LQEILTVKSD DVIGRVKTYE AIVKGENVPE PGVPESFKVL IKELQSLGMD1140
 1141 VKMMSSDDTE IEMRDTEDDD DHQSADKLNV EVETTKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] Pfam 24.79588 No description for PF04563.6 was found. No confident structure predictions are available.
    2 View Details [166..1177] PSI-BLAST 1000.0 DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle