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Protein Overview: gi|54308009, gi|...

General Information:
Name(s) found: gi|54308009 [NCBI NR]
gi|46912435 [NCBI NR]
Description(s) found:
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  • gi|54308009|ref|YP_129029.1| putative outer membrane protein OmpK [Photobacterium profundum SS9] [NCBI NR]
  • gi|46912435|emb|CAG19227.1| putative outer membrane protein OmpK [Photobacterium profundum SS9] [NCBI NR]
  • putative outer membrane protein OmpK [Photobacterium profundum SS9]gi|46912435|emb|CAG19227.1| putative outer membrane protein OmpK [Photobacterium profundum] [nrdb_11152004_Chlamydomonas]
  • putative outer membrane protein OmpK [Photobacterium profundum SS9] [nr-271106-contam.fasta]
    • Organism: Photobacterium profundum SS9
    Length: 291 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKSLVALSV LAATALPAVV SAADYSDDIH KNDYNWMQFN LMYAVNELPG ESDHDYLEME  60
   61 FGGRSGIFDL YGYVDVFNLT NSKSSDKNGE PKIFMKFAPR ISLDAVTGKD LSFGPVQELY 120
  121 IATVFEYGGD AGYTGVLTNG DGTAQLDSDG KPQYGAAKGP NNAKVGLGSD VMVPWFGKVG 180
  181 LNLYGFYDMN EKDWNGYQIS TNWFKPFHFF DNGSFISYQG YIDYQFGMNN DVPGLTSSNG 240
  241 GAMFNGLYWH SDQFAVGYGL KGYKEIYGLK DGGFAGKTTG IAHYFDVTYK F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..291] PSI-BLAST 59.69897 Tsx structure complexed with thymidine

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleoside transmembrane transporter activity
    		•  10.4297934011355 bayes_pls_golite062009
  • nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity
    		•  5.73088734190731 bayes_pls_golite062009
  • transporter activity
    		•  2.55928656852707 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.44072409024655 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.14215782778459 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.06465400776497 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle