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Protein Overview: gi|56554195

General Information:
Name(s) found: gi|56554195 [NCBI NR]
Description(s) found:
  • gi|56554195|pdb|1ULY|A Chain A, Crystal Structure Analysis Of The Arsr Homologue Dna- Binding Protein From P. Horikoshii Ot3 [NCBI NR]
    • Organism: Pyrococcus horikoshii
    Length: 192 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XAKKVKVITD PEVIKVXLED TRRKILKLLR NKEXTISQLS EILGKTPQTI YHHIEKLKEA  60
   61 GLVEVKRTEX KGNLVEKYYG RTADVFYINL YLGDEELRYI ARSRLKTKID IFKRLGYQFE 120
  121 ENELLNIXDR XSQKEFDATV RISKYIEEKE DALKDFSNED IIHAIEWLST AELARDEEYL 180
  181 ELLKRLGSIL KR

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|56554195 gi|7447797, gi|1...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..192] PSI-BLAST 32.69897 Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle