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Protein Overview: gi|61361812, gi|...

General Information:
Name(s) found: gi|61361812 [NCBI NR]
gi|190691939 [NCBI NR]
gi|190690577 [NCBI NR]
Description(s) found:
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  • gi|61361812|gb|AAX42107.1| lamin B2 [synthetic construct] [NCBI NR]
  • gi|190691939|gb|ACE87744.1| lamin B2 protein [synthetic construct] [NCBI NR]
  • gi|190690577|gb|ACE87063.1| lamin B2 protein [synthetic construct] [NCBI NR]
  • lamin B2 [synthetic construct] [nr-271106-contam.fasta]
    • Organism: synthetic construct
    Length: 600 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPLPGRAG GPATPLSPTR LSRLQEKEEL RELNDRLAHY IDRVRALELE NDRLLLKISE  60
   61 KEEVTTREVS GIKALYESEL ADARRVLDET ARERARLQIE IGKLRAELDE VNKSAKKREG 120
  121 ELTVAQGRVK DLESLFHRSE VELAAALSDK RGLESDVAEL RAQLAKAEDG HAVAKKQLEK 180
  181 ETLMRVDLEN RCQSLQEELD FRKSVFEEEV RETRRRHERR LVEVDSSRQQ EYDFKMAQAL 240
  241 EELRSQHDEQ VRLYKLELEQ TYQAKLDSAK LSSDQNDKAA SAAREELKEA RMRLESLSYQ 300
  301 LSGLQKQASA AEDRIRELEE AMAGERDKFR KMLDAKEQEM TEMRDVMQQQ LAEYQELLDV 360
  361 KLALDMEINA YRKLLEGEEE RLKLSPSPSS RVTVSRATSS SSGSLSATGR LGRSKRKRLE 420
  421 VEEPLGSGPS VLGTGTGGSG GFHLAQQASA SGSVSIEEID LEGKFVQLKN NSDKDQSLGN 480
  481 WRIKRQVLEG EEIAYKFTPK YILRAGQMVT VWAAGAGVAH SPPSTLVWKG QSSWGTGESF 540
  541 RTVLVNADGE EVAMRTVKKS SVMRENENGE EEEEEAEFGE EDLFHQQGDP RTTSRGCYVM 600
  601

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..380] PSI-BLAST 13.045757 Heavy meromyosin subfragment
    2 View Details [381..428] deduced N/A No confident structure predictions are available.
    3 View Details [429..600] PSI-BLAST 25.69897 Lamin A/C globular tail domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.29024114419453 bayes_pls_golite062009
  • protein binding
    		•  1.13460840277514 bayes_pls_golite062009
  • structural molecule activity
    		•  0.619687426425363 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle