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Protein Overview: EX7S_RUEPO

General Information:
Name(s) found: EX7S_RUEPO [Swiss-Prot]
Description(s) found:
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  • gi|56695166|ref|YP_165513.1| exodeoxyribonuclease VII, small subunit [Ruegeria pomeroyi DSS-3] [NCBI NR]
  • gi|56676903|gb|AAV93569.1| exodeoxyribonuclease VII, small subunit [Ruegeria pomeroyi DSS-3] [NCBI NR]
  • Exodeoxyribonuclease 7 small subunit OS=Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=xseB PE=3 SV=1 [Swiss-Prot]
  • Exodeoxyribonuclease 7 small subunit OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=xseB PE=3 SV=1 [Swiss-Prot]
  • exodeoxyribonuclease VII, small subunit [Silicibacter pomeroyi DSS-3] [nr-271106-contam.fasta]
    • Organism: Ruegeria pomeroyi DSS-3
    Length: 72 amino acids

    Gene Ontology:
    Cellular Component: exodeoxyribonuclease VII complex [ISSLink to PubMed article]
    Biological Process: DNA catabolic process [ISSLink to PubMed article]
    Molecular Function: exodeoxyribonuclease VII activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFEQAMKEL ETVVGQLERG DVALDQSIAL YERGAALKKR CEDELKRAEE KVAAITLDSN  60
   61 GQPTGTKPVE GL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..72] PSI-BLAST 13.0 Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • exodeoxyribonuclease VII activity
    		•  9.53039271797148 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  2.18997628780402 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.84024428921756 bayes_pls_golite062009
  • exonuclease activity
    		•  1.73859258268859 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  1.67790259289477 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  1.66998224374849 bayes_pls_golite062009
  • hydrolase activity
    		•  1.29702012649067 bayes_pls_golite062009
  • catalytic activity
    		•  0.60409960326459 bayes_pls_golite062009
  • nuclease activity
    		•  0.39966763058782 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.217756456347342 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle