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Protein Overview: gi|62734196, gi|...

General Information:
Name(s) found: gi|77548996 [NCBI NR]
gi|62734196 [NCBI NR]
gi|62734089 [NCBI NR]
Description(s) found:
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  • gi|77548996|gb|ABA91793.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|62734196|gb|AAX96305.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|62734089|gb|AAX96198.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 2406 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK ANGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
   61 LRPDLKRGNF TEEEDEFIIK LHELLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLARG 120
  121 VDPQTHRPLN AAADHHQQQQ LQAPRRFAAA PAGHHHHHPD HFAVLSNSPE ACSHSSDDEP 180
  181 SSATPPPPPR HLGIDLNLSI SLAPYQPQDQ TSEPMKQEED DEASATANGA GNAAMTTTAT 240
  241 TAAVCLCLNR LGLHGGEVEM DRQWMYADRR SKEFIDGVHY FLRVAEANRQ RGFICCPCNK 300
  301 CKNQKEYSAS RTIHFHLFES GFMPSYNCWT SHGEQGVEME EDEVEDDNIP DFAQYVGFEG 360
  361 NQTGEEEIAA DGNDVADDLG QMLQDAREDC ESEKEAHKLD KMLEDHRNSL YPGCEQGHKK 420
  421 LDTTLELLQW KAKNGVSDKA FGDLLKLVKN ILPGGNKLPE TTYEAKKIVC PLGLEVHKIH 480
  481 ACPNDCILYR GEEYENLEAC PVCKALRYKI RRDDPGEVNG QLTKKRIPAK VMWYFPIIPR 540
  541 LRRLFRNKGN ARMLRWHAEE RQQDGMLRHP ADGSQWRNID RKFKEFGKDA RNIRFGLSTD 600
  601 GMNPFGEMSS GHSTWPVTMC IYNLPPWLCM KRKYIMMPII IQGPKQPGND IDVYLRPLVE 660
  661 DLKQLWKKEG VPVWDEDKQE EFNLRALLFV TINNWPALSN LSGQSNKGYK ACTHCMDETE 720
  721 STYLKHCRKV VYMGHRRFLA ANHPVRKKGK HFEHKADHRT KPKHRSGKTV FAMVKDLKVV 780
  781 FGKGPGSQHI ESEDGHAAMW KKNSIFWELP YWEFLDVRHA IDVMHLTKNL CVNLLGFLGV 840
  841 YGKSKDTLEA RNDLKHMEQR GDLHPEPKEK GSHYLSPASY TLSKAEKESM FECLESIKVP 900
  901 SGYSTNIKRI ISTKEKKFTN LKSHDCHVLM TQLLPVVIRG ILPDNVRATI TKLCAFMNAI 960
  961 SQKVIDPDRL EALQNEVVQC LVSFELIFPP SFFNIMTHLL CHLVKEIRIL GPMYLHNMFP1020
 1021 FERYMGVLKK YVRNRARPEA SIAKGYGTEE VIEFCVEFIE DLRPIGVPES RHEGRLRGKG1080
 1081 TLGRKAIMTV DNNLFRKAHF TVLQHSSLVA PYIEEHLALV RARNIGKSDA WITRHHIDTF1140
 1141 PAWLRQHLMG NESINQQLAF LARGPSGSIA TFQGYEINGY TFYTRAQDMK STNQNSAVRV1200
 1201 DAMGHDGTTA TYYGAIEDIW ELDYGPLKVP LFRCQWVRLT GGGVMIDDSG MTTVDLNKVG1260
 1261 YSDEPFVLAN DVTQVFFVKD MSSKGKKGRG PDEPKRQVVL PGKRKIVGVE DKTDEDYDQL1320
 1321 DGQPPFTVTI DPSILLSNED TPYSRSDHKE GTIMADRDEE QILYDTIAEG SSQYWNEEEG1380
 1381 NEDPNQYLNE EGNVERDAEG NQQGHVERDV EGNQEEEASG SQPSVGQKRA RGQRGAAKKL1440
 1441 EGRHIITEVE EDGRPSAPAE AAKNYVRHSG WVVRDNVPVS TVYWRRTRAR GDHESFVQDS1500
 1501 EKEMLWTTML ETFTLPAGTE DKVKRWTLKK MAEQFQSFKG DLYQKYILKG QTPNFDTFPK1560
 1561 LRDHWDEFVA YKTGEQGKAM MERNKENAAK KKYHHHLGSG GYSVAMPKWE QMEASLIERG1620
 1621 IEPATANWPE RSKFWYYAHG GTLNPADGSL VFGYQIQEAV RRLTDAVEAS SQGTFRPDRD1680
 1681 RDELTLALQT PEHPGRTRGK GVIPWKIGFK EDIHTYRSRI RSKRDTEAKI ADLEFRVSSY1740
 1741 ELNMQEEVAR KVDERMAAHR SHDPQPTIPP AMVSPSGNRS SCASTGQVGS QSMDAMQTQD1800
 1801 ESTCPVDDIT QRTPCELHIP FKNLSIKVAS GMAIPTDPSG TYHCRPIPAG YSKVEVELVE1860
 1861 GAYEDLELDY PGGDGETHLR DTCHAIILWR RRYIILPGRQ AASRAPSPPA PPSPPQDPAP1920
 1921 SPPHAPPAPS PPQAPASTPQ DPAPTPPRAP TPTPPQAPVP APSKSRAPPA PPLAHTRATK1980
 1981 KAKVDAAKNK DPGYDCTQEE LDAYVASEVK RQFKPRSPEK KIPIDPSVRN FFRGMSASVK2040
 2041 EAIKLSDYEQ TLKKASSGKS KPVPQLGEQP NQEIEPLVTG KEMTIEQFIT DTGLTTDQLL2100
 2101 GVAPIEKAEV KYMYELGKPL VKPELLQSLP TQMYKFHQLY MEMSATGREM IGARIRDTDF2160
 2161 LQGDDILWIN FRGIYELYQL DALDVSIMSC WILMEIQRAR RRRVFDTGFI DPRKVNVAML2220
 2221 DQYPQETEDN LVHLLKAQHY KTFILLPYNT EFHWVLLLID LEACTVNVYD SMDKKESTFD2280
 2281 KVFELIDRAW YRFRHLVRGK WRERLRRKFK FPCAKQKQGT NLCGYYVCEY CHCLADQIIT2340
 2341 TRELDFIRMR DNLTTHKEFI AAVQEQLMGF INEEILDPKG EFYYDGNTIH RSLASELAAS2400
 2401 TTTSKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] PSI-BLAST 41.0 c-Myb, DNA-binding domain
    2 View Details [135..350] deduced N/A No confident structure predictions are available.
    3 View Details [351..603] MSA 2.327975 View MSA. No confident structure predictions are available.
    4 View Details [604..727] deduced N/A No confident structure predictions are available.
    5 View Details [728..845] deduced N/A No confident structure predictions are available.
    6 View Details [846..1009] deduced N/A No confident structure predictions are available.
    7 View Details [1010..1186] MSA 1.31196 View MSA. No confident structure predictions are available.
    8 View Details [1187..1264] deduced N/A No confident structure predictions are available.
    9 View Details [1265..2120] PSI-BLAST 3.69897 No description for 1y0fA was found.
    10 View Details [2121..2406] PSI-BLAST 5.522879 No description for 2iycA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle