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Protein Overview: gi|62734668, gi|...

General Information:
Name(s) found: gi|77549742 [NCBI NR]
gi|62734668 [NCBI NR]
Description(s) found:
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  • gi|77549742|gb|ABA92539.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|62734668|gb|AAX96777.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 1038 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPPRHAAA ATPPPPRHAA AATAPQCHAA AAVATPPRQP PPRCRHTAVN ERERERSNER  60
   61 ERERTRQHLM ADRDEEQILY DTIAEGSSQY WNEEEGNEDP NQYLNEEGNV ERDAEGNQQG 120
  121 HVERDVEGNQ EEEASGSQPS VGQKRARGQR GAAKKLEGRH IITEVEEDGR PSAPAEAAKN 180
  181 YVRHSGWVVR DNVPVSTVYW RRTRARGDHE SFVPDSEKEM LWTTMLETFT LPVGTEDKLR 240
  241 DHWDEFVAYK TGEQGKAMME RNKENAAKKK YHHHLGSGGY SVAMPKWEQM EASLIERGIE 300
  301 PATANWPQRS KFWYYAHGGT LNPADGSLVF GYQIQEAARR LTDAVEASSQ GTFRPDRDRD 360
  361 ELTLALQTPE HPGRTRGKGV IPWKIGFKED IHTYRSRMRS KRDTEAKIAD LEFRVSSYEL 420
  421 NMQEEVARKV DERMAAHRSH DPQPTIPPAM VSPSGNRSSC ASTGQVGSQS MDAMQTQDES 480
  481 TCPVDDITQR TPCELHIPLK NLSIKVASGM AIPTDPSGTY HCRPIPAGYS KVEVELVEGA 540
  541 YEDLELDYPG GDGETHLRDT CHAIILWRRR YIILPGRQAA SRAPSPPQDP APSPPHAPPA 600
  601 PSPPQAPAST PQDPAPTPPR APTPTPPQAP LPAPSKSRAP PAPPLAHTRA TKKAKVDAAK 660
  661 NKDPGGMSAS VKESIKLSHY ERTLKKASSG KSKPVPQLGE QPNQEIEPLV TGKEMTIEQF 720
  721 ITDTGLTTDQ LLGVAPIEKA EVKYMYELGK PLVKPELLQS LPTQMYKFHQ LYMEMSATGR 780
  781 EMIGARIRDT DFLQGDDILW INFRGIYELY QLDALDVSIM SCWILMEIQR ARRRRVFDTG 840
  841 FIDPRKVNVA MLDQYPQETE DNLVHLLKAQ HYKTFILLPY NTEFHWVLLL IDLEACTVNV 900
  901 YDSMDKKEST FDKVFELIDR AWYRFRHLVR GKWRERLRRK FKFPCAKQKQ GTNLCGYYVC 960
  961 EYCHCLADQI ITTRELDFIR MRDNLTTHKE FIAAVQEQLM GFINEEILDP KGEFYYDGNT1020
 1021 IHRSLASELA ASTTTSKP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] MSA 2.294968 View MSA. No confident structure predictions are available.
    2 View Details [251..479] deduced N/A No confident structure predictions are available.
    3 View Details [480..660] deduced N/A No confident structure predictions are available.
    4 View Details [661..777] deduced N/A No confident structure predictions are available.
    5 View Details [778..1038] PSI-BLAST 39.0 No description for 2iycA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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