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Protein Overview: CCL13

General Information:
Name(s) found: CCL13 [HGNC (HUGO)]
Description(s) found:
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  • gi|4885587|ref|NP_005399.1| small inducible cytokine A13 precursor [Homo sapiens] [NCBI NR]
  • gi|47496621|emb|CAG29333.1| CCL13 [Homo sapiens] [NCBI NR]
  • gi|4138020|emb|CAA04888.1| monocyte chemotactic protein 4 (MCP-4) [Homo sapiens] [NCBI NR]
  • gi|4097421|gb|AAD09362.1| monocyte chemotactic protein-4 precursor [Homo sapiens] [NCBI NR]
  • gi|30583609|gb|AAP36049.1| chemokine (C-C motif) ligand 13 [Homo sapiens] [NCBI NR]
  • gi|3024128|sp|Q99616.1|CCL13_HUMAN RecName: Full=C-C motif chemokine 13; AltName: Full=Small-inducible cytokine A13; AltName: Full=Monocyte chemoattractant protein 4; AltName: Full=Monocyte chemotactic protein 4; Short=MCP-4; AltName: Full=CK-beta-10; Alt [NCBI NR]
  • gi|2689217|emb|CAA66950.1| monocyte chemoattractant protein-4 [Homo sapiens] [NCBI NR]
  • gi|2340091|gb|AAB67307.1| monocyte chemotactic protein [Homo sapiens] [NCBI NR]
  • gi|1732123|gb|AAB38703.1| monocyte chemoattractant protein-4 precursor [Homo sapiens] [NCBI NR]
  • gi|14250377|gb|AAH08621.1| Chemokine (C-C motif) ligand 13 [Homo sapiens] [NCBI NR]
  • gi|119600612|gb|EAW80206.1| chemokine (C-C motif) ligand 13, isoform CRA_b [Homo sapiens] [NCBI NR]
  • chemokine (C-C motif) ligand 13 [HGNC (HUGO)]
  • (Q99616) Small inducible cytokine A13 precursor (CCL13) (Monocyte chemotactic protein 4) (MCP-4) (Monocyte chemoattractant protein 4) (CK-beta-10) (NCC-1) [Swiss-Prot]
  • C-C motif chemokine 13 OS=Homo sapiens GN=CCL13 PE=1 SV=1 [Swiss-Prot]
  • Small inducible cytokine A13 precursor [hmr_yeast5_DM3-1_pombe.fasta]
  • small inducible cytokine A13 precursor; monocyte chemoattractant protein 4; monocyte chemotactic protein 4; CK-beta-10; new CC chemokine 1; small inducible cytokine subfamily A (Cys-Cys), member 13 [HMR_022704.fasta]
  • small inducible cytokine A13 precursor; small inducible cytokine subfamily A (Cys-Cys), member 13; monocyte chemoattractant protein 4; monocyte chemotactic protein 4; CK-beta-10; new CC chemokine 1 [Human2242005.fasta]
  • small inducible cytokine A13 precursor [Homo sapiens]gi|30583609|gb|AAP36049.1| chemokine (C-C motif) ligand 13 [Homo sapiens]gi|1732123|gb|AAB38703.1| monocyte chemoattractant protein-4 precursor [Homo sapiens]gi|14250377|gb|AAH08621.1| Small inducibl [nrdb_11152004_Chlamydomonas]
  • Small inducible cytokine A13 precursor (CCL13) (Monocyte chemotactic protein 4) (MCP-4) (Monocyte chemoattractant protein 4) (CK-beta-10) (NCC-1) [Contains: Small inducible cytokine A13, long isoform; Small inducible cytokine A13, medium isoform; Small in [Yateslab_human_na_07-28-2006_reversed.fasta]
  • Tax_Id=9606 Small inducible cytokine A13 precursor [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • (NM_005408) small inducible cytokine subfamily A (Cys-Cys), member 13 [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • small inducible cytokine A13 precursor [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • small inducible cytokine A13 precursor; small inducible cytokine subfamily A (Cys-Cys), member 13; monocyte chemoattractant protein 4; monocyte chemotactic protein 4; CK-beta-10; new CC chemokine 1 [Homo sapiens] [HumanGallus06162005.fasta]
  • small inducible cytokine A13 precursor; monocyte chemoattractant protein 4; monocyte chemotactic protein 4; CK-beta-10; new CC chemokine 1; small inducible cytokine subfamily A (Cys-Cys), member 13 [Homo sapiens] [human-NCBI-042104-rand.fasta]
  • C-C motif chemokine 13 precursor (Small-inducible cytokine A13) (Monocyte chemoattractant protein 4) (Monocyte chemotactic protein 4) (MCP-4) (CK-beta-10) (NCC-1) [Contains: C-C motif chemokine 13, long chain; C-C motif chemokine 13, medium chain; C-C mot [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • chemokine (C-C motif) ligand 13, isoform CRA_b [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chemokine (C-C motif) ligand 13 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • monocyte chemoattractant protein-4 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • monocyte chemotactic protein 4 (MCP-4) [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • CCL13 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • monocyte chemotactic protein [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • chemokine (C-C motif) ligand 13 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • monocyte chemoattractant protein-4 precursor [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • monocyte chemotactic protein-4 precursor [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 SMALL INDUCIBLE CYTOKINE A13 PRECURSOR [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=CCL13 C-C motif chemokine 13 [human-ipi-250309-contam.fasta]
  • IPI:IPI00016914.1|SWISS-PROT:Q99616|TREMBL:O95690;Q6ICQ6|ENSEMBL:ENSP00000225844|REFSEQ:NP_005399|H-INV:HIT000220600|VEGA:OTTHUMP00000163804;OTTHUMP00000180940 Tax_Id=9606 Gene_Symbol=CCL13 C-C motif chemokine 13 [ipi.HUMAN.fasta.20090807]
  • [human_BMb_040710_contam.fasta]
  • Tax_Id=9606 Gene_Symbol=CCL13 Small-inducible cytokine A13 precursor ENSG00000181374 IPI00016914 [drosphohumanreversed.fasta]
  • Tax_Id=9606 Gene_Symbol=CCL13 Small inducible cytokine A13 precursor [EBI-IPI_human_3.30_06-28-2007_con_reversed.fasta]
  • C-C motif chemokine 13 precursor [Homo sapiens] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • Q99616;O95689;Q6ICQ6; RecName: Full=C-C motif chemokine 13; AltName: Full=Small-inducible cytokine A13; AltName: Full=Monocyte chemoattractant protein 4; AltName: Full=Monocyte chemotactic protein 4; AltName: Full=CK-beta-10; AltName: Full=NCC-1; Contains: RecName: Full=C-C motif chemokine 13, long chain; Contains: RecName: Full=C-C motif chemokine 13, medium chain; Contains: RecName: Full=C-C motif chemokine 13, short chain; Flags: Precursor; [UniProt_Human_2010_06_06-01-2010_reversed.fasta]
  • C-C motif chemokine 13 OS=Homo sapiens GN=CCL13 [011711_HMR.fasta]
  • IPI:IPI00016914.1|SWISS-PROT:Q99616|TREMBL:O95690|ENSEMBL:ENSP00000225844|REFSEQ:NP_005399|H-INV:HIT000220600|VEGA:OTTHUMP00000163804;OTTHUMP00000180940 Tax_Id=9606 Gene_Symbol=CCL13 C-C motif chemokine 13 [ipi.HUMAN.fasta.20100406]
  • GeneSymbol=CCL13 Synonyms=CKb10|MCP-4|MGC17134|NCC-1|NCC1|SCYA13|SCYL1 C-C motif chemokine 13 precursor [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • IPI:IPI00016914.1|SWISS-PROT:Q99616|TREMBL:O95690|ENSEMBL:ENSP00000225844|REFSEQ:NP_005399|H-INV:HIT000220600|VEGA:OTTHUMP00000163804 Tax_Id=9606 Gene_Symbol=CCL13 C-C motif chemokine 13 [ipi.HUMAN.20110912.fasta]
  • C-C motif chemokine 13 GN=CCL13 [Doctor+uniprot-HUMAN-120911.fasta]
    • Organism: Homo sapiens
    Length: 98 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSAVLLCL LLMTAAFNPQ GLAQPDALNV PSTCCFTFSS KKISLQRLKS YVITTSRCPQ  60
   61 KAVIFRTKLG KEICADPKEK WVQNYMKHLG RKAHTLKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] PSI-BLAST 22.69897 MONOCYTE CHEMOATTRACTANT PROTEIN-3, NMR, MINIMIZED AVERAGE STRUCTURE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytokine activity
    		•  8.07273475133641 bayes_pls_golite062009
  • chemokine receptor binding
    		•  7.19574940007631 bayes_pls_golite062009
  • chemokine activity
    		•  7.19574940007631 bayes_pls_golite062009
  • G-protein-coupled receptor binding
    		•  7.12866319987718 bayes_pls_golite062009
  • receptor binding
    		•  5.70505228637425 bayes_pls_golite062009
  • protein binding
    		•  3.96178206863622 bayes_pls_golite062009
  • interleukin-8 receptor binding
    		•  3.86135397575984 bayes_pls_golite062009
  • binding
    		•  3.44333267537536 bayes_pls_golite062009
  • chemoattractant activity
    		•  3.05299139114464 bayes_pls_golite062009
  • heparin binding
    		•  2.48790323783525 bayes_pls_golite062009
  • glycosaminoglycan binding
    		•  1.80091312295242 bayes_pls_golite062009
  • CCR2 chemokine receptor binding
    		•  1.78317158345185 bayes_pls_golite062009
  • polysaccharide binding
    		•  1.28416986663426 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.2394639113112 bayes_pls_golite062009
  • kinase activity
    		•  1.20242374860894 bayes_pls_golite062009
  • protein kinase activity
    		•  1.20167556785693 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.05370662506053 bayes_pls_golite062009
  • pattern binding
    		•  1.02739535268516 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.0107537553708 bayes_pls_golite062009
  • CCR chemokine receptor binding
    		•  0.697359799598971 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.14673741350408 bayes_pls_golite062009
  • catalytic activity
    		•  0.11400259673574 bayes_pls_golite062009
  • transporter activity
    		•  0.0541029584618528 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle