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Protein Overview: gi|89049064, gi|...

General Information:
Name(s) found: gi|89075242 [NCBI NR]
gi|89049064 [NCBI NR]
Description(s) found:
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  • gi|89075242|ref|ZP_01161673.1| 30S ribosomal protein S12 [Photobacterium sp. SKA34] [NCBI NR]
  • gi|89049064|gb|EAR54631.1| 30S ribosomal protein S12 [Photobacterium sp. SKA34] [NCBI NR]
  • 30S ribosomal protein S12 [Photobacterium sp. SKA34] [nr-271106-contam.fasta]
    • Organism: Photobacterium sp. SKA34
    Length: 124 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATINQLVRK PRAKQVVKSN VPALEACPQK RGVCTRVYTT TPKKPNSALR KVCRVRLTNG  60
   61 FEVTSYIGGE GHNLQEHSVV LIRGGRVKDL PGVRYHTVRG ALDCAGVNDR KQGRSKYGVK 120
  121 RPKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..124] PSI-BLAST 49.0 No description for 1vs5L was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.45319063235379 bayes_pls_golite062009
  • structural molecule activity
    		•  6.87843523680097 bayes_pls_golite062009
  • misfolded RNA binding
    		•  4.4877915495248 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.7132569326175 bayes_pls_golite062009
  • RNA binding
    		•  3.30183895019873 bayes_pls_golite062009
  • DNA binding
    		•  2.94486937698231 bayes_pls_golite062009
    		• 2.80746531284205 bayes_pls_golite062009
  • binding
    		•  2.40532042551671 bayes_pls_golite062009
  • mRNA binding
    		•  1.65819015373151 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.24522359765541 bayes_pls_golite062009
  • protein binding
    		•  1.20309946451799 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.10289736160471 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.96886436248958 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.91658673456122 bayes_pls_golite062009
  • transcription factor activity
    		•  0.672797026326101 bayes_pls_golite062009
  • transcription activator activity
    		•  0.581984534552921 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.47336621289748 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.438266295385131 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.39131721416336 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.3506031439435 bayes_pls_golite062009
  • nuclease activity
    		•  0.17660139576327 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.1542034177713 bayes_pls_golite062009
  • transcription factor binding
    		•  0.132487446755259 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.0717589400404304 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle