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Protein Overview: gi|218195110, gi...

General Information:
Name(s) found: gi|218195110 [NCBI NR]
gi|116310738 [NCBI NR]
gi|116310337 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|218195110|gb|EEC77537.1| hypothetical protein OsI_16435 [Oryza sativa Indica Group] [NCBI NR]
  • gi|116310738|emb|CAH67533.1| H0425E08.1 [Oryza sativa (indica cultivar-group)] [NCBI NR]
  • gi|116310337|emb|CAH67352.1| OSIGBa0130B08.12 [Oryza sativa (indica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 589 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSEDDMLDA NDSADDDFYS GGEAGLGGSD DGDADYDFAD HDSDDSAELL SHRQQQNYSI  60
   61 LSEADIQQRQ EDDINRVSTV LSISKSEACV LLRNYNWSVS KVHDEWFADE EHVRKVVGFP 120
  121 EKLIEMPNDR ELTCGICFEN CPRTSMSAAA CGHPFCSACW RGYISTSIND GPGCLMLRCP 180
  181 DPSCTAAVGQ DMINSLADDE DREKYGRYLR RSYIEDNRKT KWCPAPGCEY AVEFVMGSGS 240
  241 YDVNCNCSYG FCWNCTEEAH RPVDCATVSK WILKNSAESE NMNWILANSK PCPKCKRPIE 300
  301 KNQGCMHITC TPPCKFEFCW LCLGPWSEHG ERTGGFYACN RYEAARQEGA YDESERRREM 360
  361 AKNSLERYTH YYERWAANQS SRQKALGDLL SLQNDKLEKL SDIQSQPESQ LKFIIEAWLQ 420
  421 IVECRRVLKW TYAYGFYLPE HEHAKRQFFE YLQGEAESGL ERLHQCAEKE LQVYLEAESP 480
  481 SKDFNDFRTK LAGLTSVTRN YFENLVRALE TGLNDVGPST SHGTCSKSAT SKSLGSKSKS 540
  541 SKSRASSTSS KTGGSSRGVD ESNIWTCDQC TYANPRSARN CQACNNQHR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] deduced N/A No confident structure predictions are available.
    2 View Details [109..275] FFAS03 2.85 No description for 2cklB was found.
    3 View Details [276..359] PSI-BLAST 5.39794 Solution Structure of the C-terminal RING from a RING-IBR-RING (TRIAD) motif
    4 View Details [360..589] MSA 6.519993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  5.32809533104435 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  5.17943669371679 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  4.2482314105959 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  3.07217714843839 bayes_pls_golite062009
  • binding
    		•  2.14721962003828 bayes_pls_golite062009
  • protein binding
    		•  1.5975811408548 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  0.637551805535732 bayes_pls_golite062009
  • ligase activity
    		•  0.63517530468004 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  0.549461161056205 bayes_pls_golite062009
  • peptidase activity
    		•  0.234160677232374 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  0.159023519781458 bayes_pls_golite062009
  • hydrolase activity
    		•  0.156835837705934 bayes_pls_golite062009
  • catalytic activity
    		•  0.14112008370434 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.087080412746045 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0370371235994398 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle