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Protein Overview: Pdp1-PB, FBpp029...

General Information:
Name(s) found: FBpp0312154 [FlyBase]
FBpp0297493 [FlyBase]
Pdp1-PB / FBpp0076491 [FlyBase]
Description(s) found:
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  • gi|7295189|gb|AAF50513.1| PAR-domain protein 1, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|6531613|gb|AAF15506.1| PAR domain protein 1-alpha [Drosophila melanogaster] [NCBI NR]
  • gi|27820037|gb|AAO25050.1| GM02880p [Drosophila melanogaster] [NCBI NR]
  • gi|24660438|ref|NP_729299.1| PAR-domain protein 1, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|24660432|ref|NP_729298.1| PAR-domain protein 1, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|23093952|gb|AAN12022.1| PAR-domain protein 1, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|1354818|gb|AAB97107.1| PAR domain protein 1-alpha [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3L:complement(7809426..7809512,7809584..7809825,7810537..7810762,7811169..7811323,7846283..7846385); ID=FBpp0312154; name=Pdp1-PP; parent=FBgn0016694,FBtr0346536; dbxref=FlyBase:FBpp0312154,FlyBase_Annotation_IDs:CG17888-PP; MD5=838894b6cbcaca40e026679686020351; length=270; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=3L:complement(7809426..7809512,7809584..7809825,7810537..7810762,7811169..7811323,7846283..7846385); ID=FBpp0297493; name=Pdp1-PK; parent=FBgn0016694,FBtr0306535; dbxref=FlyBase:FBpp0297493,REFSEQ:NP_524832,GB_protein:AAN12023,FlyBase_Annotation_IDs:CG17888-PK; MD5=838894b6cbcaca40e026679686020351; length=270; release=r5.56; species=Dmel; [FlyBase]
  • The gene PAR-domain protein 1 is referred to in FlyBase by the symbol Dmel\Pdp1 (CG17888, FBgn0016694). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:7807437..7860472. It has the cytological map location 66A14-66A17. There is experimental evidence that it has the molecular function</span>: DNA binding. There is experimental evidence that it is involved in the biological process</span>: growth; circadian rhythm; mitosis; DNA endoreduplication; response to nutrient. 29 alleles are reported. No phenotypic data is available. It has 7 annotated transcripts and 7 annotated polypeptides. [FlyBase]
  • >CG17888-PB translation from_gene[CG17888 Pdp1 FBgn0016694] seq_release:3 mol_weight=30370 cds_boundaries:(3L:7,775,858..7,812,814[-]) aa_length:270 transcript_info:[CG17888-RB seq_release:3] gene_info:[gene symbol:Pdp1 FBgn0016694 gene_boundaries:(3L: [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG17888-PA translation from_gene[CG17888 Pdp1 FBgn0016694] seq_release:3 mol_weight=30370 cds_boundaries:(3L:7,775,858..7,812,814[-]) aa_length:270 transcript_info:[CG17888-RA seq_release:3] gene_info:[gene symbol:Pdp1 FBgn0016694 gene_boundaries:(3L: [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q24217) PAR domain protein 1 (GM02880p) [DrosMelano7227.FASTAC.txt]
  • (AE003557) Pdp1 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG17888-PB, isoform B [Drosophila melanogaster]gi|7295189|gb|AAF50513.1| CG17888-PA, isoform A [Drosophila melanogaster]gi|27820037|gb|AAO25050.1| GM02880p [Drosophila melanogaster]gi|6531613|gb|AAF15506.1| PAR domain protein 1-alpha [Drosophila melano [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3L:complement(7809426..7809512,7809584..7809825,7810537..7810762,7811169..7811323,7846283..7846385); ID=FBpp0076491; name=Pdp1-PB; parent=FBgn0016694,FBtr0076776; dbxref=FlyBase:FBpp0076491,FlyBase_Annotation_IDs:CG17888-PB,GB_protein:AA [fly-100309-contam.fasta]
  • GM02880p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG17888-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • PAR domain protein 1-alpha [Drosophila melanogaster] [nr-271106-contam.fasta]
  • PAR-domain protein 1 CG17888-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG17888-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • PAR-domain protein 1 CG17888-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3L:complement(7809426..7809512,7809584..7809825,7810537..7810762,7811169..7811323,7846283..7846385); ID=FBpp0076491; name=Pdp1-PB; parent=FBgn0016694,FBtr0076776; dbxref=FlyBase:FBpp0076491,FlyBase_Annotation_IDs:CG17888-PB,GB_protein:AAN12022.1,REFSEQ:NP_729299,GB_protein:AAN12022; MD5=838894b6cbcaca40e026679686020351; length=270; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3L:complement(7809426..7809512,7809584..7809825,7810537..7810762,7811169..7811323,7846283..7846385); ID=FBpp0076491; name=Pdp1-PB; parent=FBgn0016694,FBtr0076776; dbxref=FlyBase:FBpp0076491,FlyBase_Annotation_IDs:CG17888-PB,GB_protein:AAN12022.1,REFSEQ:NP_729299,GB_protein:AAN12022; MD5=838894b6cbcaca40e026679686020351; length=270; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • GM02880p OS=Drosophila melanogaster GN=Pdp1 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3L:complement(7809426..7809512,7809584..7809825,7810537..7810762,7811169..7811323,7846283..7846385); ID=FBpp0076491; name=Pdp1-PB; parent=FBgn0016694,FBtr0076776; dbxref=FlyBase:FBpp0076491,FlyBase_Annotation_IDs:CG17888-PB,GB_protein:AAN12022.1,REFSEQ:NP_729299,GB_protein:AAN12022,FlyMine:FBpp0076491,modMine:FBpp0076491; MD5=838894b6cbcaca40e026679686020351; length=270; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(7809426..7809512,7809584..7809825,7810537..7810762,7811169..7811323,7846283..7846385); ID=FBpp0297493; name=Pdp1-PK; parent=FBgn0016694,FBtr0306535; dbxref=FlyBase:FBpp0297493,REFSEQ:NP_524832,GB_protein:AAN12023,FlyBase_Annotation_IDs:CG17888-PK; MD5=838894b6cbcaca40e026679686020351; length=270; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0076491; name=Pdp1-PB; parent=FBgn0016694,FBtr0076776; dbxref=FlyBase:FBpp0076491,FlyBase_Annotation_IDs:CG17888-PB,GB_protein:AAN12022.1,REFSEQ:NP_729299,GB_protein:AAN12022,FlyMine:FBpp0076491,modMine:FBpp0076491; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0312154; name=Pdp1-PP; parent=FBgn0016694,FBtr0346536; dbxref=FlyBase:FBpp0312154,FlyBase_Annotation_IDs:CG17888-PP,GB_protein:AHN57998,REFSEQ:NP_001286973; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0297493; name=Pdp1-PK; parent=FBgn0016694,FBtr0306535; dbxref=FlyBase:FBpp0297493,REFSEQ:NP_524832,GB_protein:AAN12023,FlyBase_Annotation_IDs:CG17888-PK; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0076491; name=Pdp1-PB; parent=FBgn0016694,FBtr0076776; dbxref=FlyBase:FBpp0076491,FlyBase_Annotation_IDs:CG17888-PB,GB_protein:AAN12022.1,REFSEQ:NP_729299,GB_protein:AAN12022,FlyMine:FBpp0076491,modMine:FBpp0076491; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0312154; name=Pdp1-PP; parent=FBgn0016694,FBtr0346536; dbxref=FlyBase:FBpp0312154,FlyBase_Annotation_IDs:CG17888-PP,GB_protein:AHN57998,REFSEQ:NP_001286973; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0297493; name=Pdp1-PK; parent=FBgn0016694,FBtr0306535; dbxref=FlyBase:FBpp0297493,REFSEQ:NP_524832,GB_protein:AAN12023,FlyBase_Annotation_IDs:CG17888-PK; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q8SZT1, GM02880p OS=Drosophila melanogaster GN=Pdp1 PE=2 SV=1 [DROME.fasta.20160308]
  • FBpp0076491 type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0076491; name=Pdp1-PB; parent=FBgn0016694,FBtr0076776; dbxref=FlyBase:FBpp0076491,FlyBase_Annotation_IDs:CG17888-PB,GB_protein:AAN12022.1,REFSEQ:NP_729299,GB_protein:AAN12022,FlyMine:FBpp0076491,modMine:FBpp0076491; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0312154 type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0312154; name=Pdp1-PP; parent=FBgn0016694,FBtr0346536; dbxref=FlyBase:FBpp0312154,FlyBase_Annotation_IDs:CG17888-PP,GB_protein:AHN57998,REFSEQ:NP_001286973; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0297493 type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0297493; name=Pdp1-PK; parent=FBgn0016694,FBtr0306535; dbxref=FlyBase:FBpp0297493,REFSEQ:NP_524832,GB_protein:AAN12023,FlyBase_Annotation_IDs:CG17888-PK; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0076491; name=Pdp1-PB; parent=FBgn0016694,FBtr0076776; dbxref=FlyBase:FBpp0076491,FlyBase_Annotation_IDs:CG17888-PB,GB_protein:AAN12022.1,REFSEQ:NP_729299,GB_protein:AAN12022,UniProt/TrEMBL:Q7KKI2,FlyMine:FBpp0076491,modMine:FBpp0076491; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0312154; name=Pdp1-PP; parent=FBgn0016694,FBtr0346536; dbxref=FlyBase:FBpp0312154,FlyBase_Annotation_IDs:CG17888-PP,GB_protein:AHN57998,REFSEQ:NP_001286973,UniProt/TrEMBL:Q7KKI2; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3L:complement(join(7853183..7853285,7818069..7818223,7817437..7817662,7816484..7816725,7816326..7816412)); ID=FBpp0297493; name=Pdp1-PK; parent=FBgn0016694,FBtr0306535; dbxref=FlyBase:FBpp0297493,REFSEQ:NP_524832,GB_protein:AAN12023,FlyBase_Annotation_IDs:CG17888-PK,UniProt/TrEMBL:Q7KKI2; MD5=838894b6cbcaca40e026679686020351; length=270; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 270 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: transcription [TAS]
    regulation of transcription, DNA-dependent [IEA]
    DNA endoreduplication [IMP]
    response to nutrient [IMP]
    mitosis [IMP]
    circadian rhythm [IDA][IGI][IMP][TAS]
    growth [IMP]
    Molecular Function: DNA binding [IPI]
    transcription factor activity [IEA][TAS]
    protein homodimerization activity [ISS]
    protein dimerization activity [IEA]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRERSSPT LIETGLKNLI GGRDGNYPLI SGINGKSTSN SKEIICPDDK YKEEGDIWNV  60
   61 EAQTAFLGPN LWDKTLPYDA DLKVTQYADL DEFLSENNIP DGLPGTHLGH SSGLGHRSDS 120
  121 LGHAAGLSLG LGHITTKRER SPSPSDCISP DTLNPPSPAE STFSFASSGR DFDPRTRAFS 180
  181 DEELKPQPMI KKSRKQFVPD ELKDDKYWAR RRKNNIAAKR SRDARRQKEN QIAMRARYLE 240
  241 KENATLHQEV EQLKQENMDL RARLSKFQDV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] MSA 10.425997 View MSA. No confident structure predictions are available.
    2 View Details [199..270] PSI-BLAST 16.221849 CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle