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Protein Overview: cda1

General Information:
Name(s) found: cda1 / SPAC19G12.03 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • chitin deacetylase Cda1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 320 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    ascospore wall [TASLink to PubMed article]
    cytosol [IDALink to PubMed article]
    chitosan layer of spore wall [ICLink to PubMed article]
    Biological Process: ascospore wall chitin catabolic process [IMPLink to PubMed article]
    ascospore wall assembly [TASLink to PubMed article]
    Molecular Function: chitin deacetylase activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYETRDLTGN AGKPVDTNPW PNNSKIAVSF VVNYEEGGER SLLYEDEGFE TFLTEAGLMP  60
   61 FPNRPVRERS IESCFEYGSR CGFWRILNLF KKHKVPFTCW AIGQAVEKNP VVVGAMEEAG 120
  121 CEVGSHSHRW INYEGVPPET EYEHIKKSVQ AIQKASPSNS APRSWYTGRA SLNTRKLVCQ 180
  181 VYKDLGLPQP FDSDEYNDDY PYWVADPLAS KPGAEDDKGL LIVPYTLEVN DMKYAVAPGF 240
  241 CNSDDFYTYA RDAFDVLYEE GLEGAPKMMT IGLHCRLTGR PGRFRGLQKL MEHITSKEGV 300
  301 WVATREQIAQ AWSAKHPYKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..320] PSI-BLAST 78.69897 Crystal structure of conserved hypothetical protein from Pseudomonas aeruginosa PAO1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chitin deacetylase activity
    		•  10.7874217761055 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  3.74440177036934 bayes_pls_golite062009
  • hydrolase activity
    		•  3.36553865279318 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  3.03068569473537 bayes_pls_golite062009
  • deacetylase activity
    		•  2.13567346052761 bayes_pls_golite062009
  • binding
    		•  1.72578164002896 bayes_pls_golite062009
  • mannosidase activity
    		•  1.21389958583146 bayes_pls_golite062009
  • catalytic activity
    		•  1.17882014774774 bayes_pls_golite062009
  • protein binding
    		•  0.394432087623352 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  0.133068529747333 bayes_pls_golite062009
  • alpha-mannosidase activity
    		•  0.127808084365176 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle