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Protein Overview: SPBC28F2.11

General Information:
Name(s) found: SPBC28F2.11 [Sanger Pombe]
Description(s) found:
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  • pir||T40054 probable HMG-box protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74638876|sp|Q9USU7.1|YHHB_SCHPO RecName: Full=HMG box-containing protein C28F2.11 [NCBI NR]
  • gi|6018695|emb|CAB57940.1| HMG box protein [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112464|ref|NP_595672.1| INO80 complex subunit (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • INO80 complex subunit [Sanger Pombe]
  • HMG box-containing protein C28F2.11 OS=Schizosaccharomyces pombe GN=SPBC28F2.11 PE=1 SV=1 [Swiss-Prot]
  • PUTATIVE HMG-BOX PROTEIN: Q9USU7; [pompepVF.fasta]
  • Putative HMG-box protein [pompep4896]
  • |||putative transcription factor [pompepnew.fasta]
  • SPBC28F2.11 protein [4896.FASTAC]
  • |||transcription factor (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative HMG-box protein [Schizosaccharomyces pombe]gi|6018695|emb|CAB57940.1| SPBC28F2.11 [Schizosaccharomyces pombe]gi|7492654|pir||T40054 probable HMG-box protein - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (Q9USU7) Putative HMG-box protein [pompep4896_normal_reversed]
  • |||HMG box protein|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC28F2.11 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • transcription factor [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • HMG box-containing protein C28F2.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC28F2.11 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 310 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    Biological Process: anti-apoptosis [IGILink to PubMed article]
    regulation of transcription, DNA-dependent [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQNSTQLEK ISGSFTRLAE AFQLALTACR EIEESLPSIL GEKSEVSKPF KPAVTDPSNA  60
   61 KKEINMAIES PSKKATSPKK ATPAAVAPVE ATSAVDTSEA VASMTPNKRK ARDPAQPKRP 120
  121 PSAYNLFQKN QRSEIKESLG EKSNDVKEVN KAMHEKWGSL SEDDRKTYEE EASKLREAYE 180
  181 EEMAAYNASK ENASVADSRV TAEETSTKPS EDLSSPTKKD LIDFSETRPL AQASRATPDI 240
  241 KEQHAKKPKR KHTRSTVPTS NVEPVSQPQP SPDKIVSSPN PPSAKREKKK RRKSSMSSSI 300
  301 TTPPTAKVAN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] deduced N/A No confident structure predictions are available.
    2 View Details [110..310] PSI-BLAST 28.69897 No description for 2gzkA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  3.1918149935012 bayes_pls_golite062009
  • DNA binding
    		•  2.9192628885142 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69023297073035 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.58116094906635 bayes_pls_golite062009
  • transcription factor activity
    		•  1.78719688305492 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.45429159567789 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.20795951017807 bayes_pls_golite062009
  • protein binding
    		•  1.131658134984 bayes_pls_golite062009
  • transcription factor binding
    		•  0.3855089242113 bayes_pls_golite062009
  • chromatin binding
    		•  0.26686706452968 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.1389551657237 bayes_pls_golite062009
  • transcription activator activity
    		•  0.0268189092037101 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle