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Protein Overview: SPAPB8E5.07c

General Information:
Name(s) found: SPAPB8E5.07c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • ribosome biogenesis protein Rrp12 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1163 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    Biological Process: ribosomal subunit export from nucleus [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVNEPLQI ELRKIRNSST AGVINEFDVI VSAVEGTLKE QKTEATPTAY LVALLTLVKE  60
   61 FTDLKKNFKG HTFQLLELVI KYVPSNVLQA KFPQILSVLA PVVNNAETNK TVLLPYLNVL 120
  121 EKLLLLQDYS SWTHGNSCKT SIYILLFFAL SNTEKTRVRS LQILANILKN PPAGPVTEHP 180
  181 AIKYTAFEPL RLLESLATAK KPKTPAEVQK LNNSLVLIRV LCSSTHWPMT LVERLCRSCV 240
  241 LIVGQRSTNS ILLVYQILDG LSKKSVDYTD AVSLRMTLIC LQKLEPSEHD PILMVGWLKA 300
  301 MNTAIRAFNI LDKETAKYEC LHRFKAFFTL LESESMEIRL QTATTICSVI GCLDTTPNSF 360
  361 AVVEEICSFI CDALRDIRFR LAYPECFQII SSLCDKLGPH SDPYLIPALE VIDYLRGSEG 420
  421 FDGKALVDEA IGSFVRAIGP EAMLRVLPLN LELNDKDAVG RAWLLPVLRD NIRFANLAHF 480
  481 TNYFVPLSGQ LYQKVIEMND LDSIPSKLLQ TLVDQIWSLL PGYCYLPLDL QSSFTLEFAS 540
  541 ILVNVLYEQV SLRSVICNSL TALVETNSKV ADKLPLDDVI SVPVSASDAS SNLAFLTNMS 600
  601 SNFLSVLLNV FSSTPSQYRY PILKCIQTWI FISSNDTIHS VYKKVTDLLP DSLNDLAGSF 660
  661 NIAADGISSP MAYSLIDLLI VISPYLNQDY AVTLFEYVHE FLRHVNPAIQ KKGYKLLGTL 720
  721 LRVDYGKAYA TQHVKEIFEE LSSVADRVVS STRKDRLASL NALYELQSSE LVIAIPQLLP 780
  781 EAIISLKEVN EKARHTAFQL LFNIAKSAVN SVEFGNSKPE RVEKFVSVIS AGLAGSSTHM 840
  841 ISATIIAISS IVMEYKVFIS EPFLVQLIST LNLFITSSKR EIAKAAIDFI KISVSSFPVE 900
  901 CIKPLLPELI PNLLAWSHEG KANLRVKVRH LFEKMGRKYG IAEIEPFFPA EDKKLITNIR 960
  961 KTQERNIRKR AMKRDPAKPS SAQPRKTFAS AYEAAVYDTD DEAEEEFEND EMNNGNGGDL1020
 1021 RMDEAFVQED NDEEPLDLLD IEAVSKISST DPRKKLAARK QKLNSAFKSN EEGRLLINDS1080
 1081 DEDELIEDSL ANAQQHAEVN RTYLEAVAGK ESFRRGLNNR VKFSNKRVRD DYDEEMEEVE1140
 1141 VPEVTRKPAK QKFDRKQRGQ KGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] deduced N/A No confident structure predictions are available.
    2 View Details [153..859] PSI-BLAST 8.045757 Kap95p:RanGTP complex
    3 View Details [860..973] PSI-BLAST 38.0 Crystal Structure of The Cand1-Cul1-Roc1 Complex
    4 View Details [974..1163] MSA 1.076976 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  3.51706019693543 bayes_pls_golite062009
  • structural molecule activity
    		•  2.89396355704664 bayes_pls_golite062009
  • protein transporter activity
    		•  2.53371837790268 bayes_pls_golite062009
  • binding
    		•  2.47395644967726 bayes_pls_golite062009
  • protein binding
    		•  2.13529412360404 bayes_pls_golite062009
  • transporter activity
    		•  1.75215962704174 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64539435934931 bayes_pls_golite062009
  • mRNA binding
    		•  1.49239143012448 bayes_pls_golite062009
  • signal sequence binding
    		•  1.46991748555798 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.45007172288203 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  1.27627067567874 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.06250847754412 bayes_pls_golite062009
  • DNA binding
    		•  0.946847037737779 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.58863391569272 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.506596930838594 bayes_pls_golite062009
  • nuclear export signal receptor activity
    		•  0.501965300276747 bayes_pls_golite062009
  • transcription factor activity
    		•  0.362911773502049 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.229272703956702 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.0330689772947346 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00566872062869428 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle