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Protein Overview: ifta-2

General Information:
Name(s) found: ifta-2 / CE20116 [WormBase]
Description(s) found:
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  • WBGene00012132 locus:ifta-2 status:Partially_confirmed UniProt:Q9XUC2 protein_id:CAB05299.1 [WormBase]
  • pir||T25422 hypothetical protein T28F3.6 - Caenorhabditis elegans [NCBI NR]
  • gi|3880355|emb|CAB05299.1| C. elegans protein T28F3.6, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17542612|ref|NP_503073.1| IntraFlagellar Transport Associated family member (ifta-2) [Caenorhabditis elegans] [NCBI NR]
  • Intraflagellar transport associated protein 2 OS=Caenorhabditis elegans GN=ifta-2 PE=2 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE20116 WBGene00012132 status:Partially_confirmed TR:Q9XUC2 protein_id:CAB05299.1 [wormpep150.fasta]
  • 20116 WBGene00012132 status:Partially_confirmed TR:Q9XUC2 protein_id:CAB05299.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative cytoplasmic protein of bilaterial origin (4S242) [Caenorhabditis elegans]gi|3880355|emb|CAB05299.1| Hypothetical protein T28F3.6 [Caenorhabditis elegans]gi|7508691|pir||T25422 hypothetical protein T28F3.6 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q9XUC2 protein_id:CAB05299.1 [wormpep115.fasta.reversed]
  • CE20116 status:Predicted TR:Q9XUC2 protein_id:CAB05299.1 [wormpep80.hongbin]
  • CE20116 WBGene00012132 locus:ifta-2 status:Partially_confirmed UniProt:Q9XUC2_CAEEL protein_id:CAB05299.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE20116 WBGene00012132 locus:ifta-2 status:Partially_confirmed UniProt:Q9XUC2_CAEEL protein_id:CAB05299.1| [wormORF-contam.fasta]
  • Hypothetical protein T28F3.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T28F3.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE20116 WBGene00012132 locus:ifta-2 status:Partially_confirmed TR:Q9XUC2 protein_id:CAB05299.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE20116 WBGene00012132 locus:ifta-2 status:Partially_confirmed UniProt:Q9XUC2 protein_id:CAB05299.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE20116 WBGene00012132 locus:ifta-2 status:Partially_confirmed UniProt:Q9XUC2 protein_id:CAB05299.1 Intraflagellar transport associated protein 2 [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: microtubule basal body [IDA]
    cilium axoneme [IDA]
    Biological Process: dauer larval development [IMP]
    determination of adult lifespan [IMP]
    insulin-like growth factor receptor signaling pathway [IGI]
    protein localization [IMP]
    Molecular Function: GTP binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATENPQTWA LWLILSEMAS DMQEDKKVAK ILVLGPPKAG KTTLCTFLAD FMEDGDTLKK  60
   61 GEDSGERERK FEFEFTSVYR PTKGVRIQEF ETHEFFTEQE QNELGGTRRL EDSEIQLWDV 120
  121 SGDKKYEDCW PAIKENAEGV ILVVNPEEHK GSDLQQWFYE FVEKENIDLS CVMVILNEQG 180
  181 AKKTNHEQIS GFEILPKLRG VHHVAHHFGS EAMQVKMEVN SFMASVLKMD QRQMGSGVDH 240
  241 GLGYADEQED DF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..252] PSI-BLAST 37.522879 Crystal structure of human RAB1A in complex with GDP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  1.77465535798537 bayes_pls_golite062009
  • binding
    		•  1.7440092435568 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.72771981973648 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.70775631232424 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.70592257989501 bayes_pls_golite062009
  • transporter activity
    		•  1.17593506797758 bayes_pls_golite062009
  • ATPase activity
    		•  1.16412666242905 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  1.01662962037416 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.01556109575824 bayes_pls_golite062009
  • hydrolase activity
    		•  0.812500703771977 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.718484047943123 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.644921163406031 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.642988046660653 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.632697310016186 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.626266240374543 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.626051755806866 bayes_pls_golite062009
  • nucleotide binding
    		•  0.621689558153948 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.614658238315815 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.613207201020795 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.611580817005953 bayes_pls_golite062009
  • GTPase activity
    		•  0.112920351857443 bayes_pls_golite062009
  • ATP binding
    		•  0.0857213487022991 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.0562710379889879 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.0492207907687829 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle