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Protein Overview: CE33612

General Information:
Name(s) found: CE33612 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00008514 Uncharacterized protein F02A9.4b status:Confirmed UniProt:P34384 protein_id:CAA79619.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 394 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: sodium ion transport [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    RNA processing [IEALink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]
    ribonuclease III activity [IEALink to PubMed article]
    methylmalonyl-CoA decarboxylase activity [IEALink to PubMed article]
    ligase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRHVAQNLG SRNTSIQSYR LLRTRWERGY LKDLYHRRQI LGADPAISRS SYPNWDYDSE  60
   61 LYAFGHRIGA PEISEDQYIK ALTNESFFQR ADVEENVESA QPGAEVGTEH NAELVKRGEQ 120
  121 NLSIWLKRYL RFHLAKAPEE LIEAIDSHLL DDECLAGIAS HLGIDHLVRT KEFPISQESS 180
  181 ADAFRALAGV FSDEKVKNLV IDFIVPQLVD IDFADIYPLA DPLAVVTDLL KSNGVTEIEP 240
  241 RVLRSAGENS AEPIYVVAIY ADKLKNVGQS AGESLAIAVD MAAREALLRL WDITSEKVLF 300
  301 FGDRAANVPL ERYSQPNFSL SQKCSPGTNT NIIDHSQPVE SPDNLIEAVL RYRNVVDAEV 360
  361 GKSYTKRLRH KFSRGSLAKR SFRYLVKPKP YTVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..61] PSI-BLAST 11.69897 Crystal Structure of Dicer from Giardia intestinalis
    2 View Details [62..297] PSI-BLAST 41.69897 RNase III endonuclease catalytic domain; RNase III, C-terminal domain
    3 View Details [298..394] PSI-BLAST 6.045757 No description for 2yt4A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  3.36745043289731 bayes_pls_golite062009
  • structural molecule activity
    		•  3.14974722428281 bayes_pls_golite062009
  • RNA binding
    		•  1.99704120917168 bayes_pls_golite062009
  • binding
    		•  1.51260351901676 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.08296225017277 bayes_pls_golite062009
  • nuclease activity
    		•  0.87617073306996 bayes_pls_golite062009
  • endonuclease activity
    		•  0.752043692857818 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.46330171850662 bayes_pls_golite062009
  • protein binding
    		•  0.32114973384806 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.178480726843532 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle