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Protein Overview: EF1D1_ARATH

General Information:
Name(s) found: EF1D1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30691619|ref|NP_174314.2| elongation factor 1-beta / EF-1-beta [Arabidopsis thaliana] [NCBI NR]
  • gi|190886515|gb|ACE95180.1| At1g30230 [Arabidopsis thaliana] [NCBI NR]
  • gi|13124717|sp|P48006.2|EF1D1_ARATH RecName: Full=Elongation factor 1-delta 1; Short=EF-1-delta 1; AltName: Full=Elongation factor 1B-beta 1; AltName: Full=eEF-1B beta 1 [NCBI NR]
  • gi|110740551|dbj|BAE98381.1| elongation factor 1-beta like protein [Arabidopsis thaliana] [NCBI NR]
  • Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=1 SV=2 [Swiss-Prot]
  • (P48006) Elongation factor 1-beta (EF-1-beta) [Swiss-Prot]
  • Elongation factor 1-beta (EF-1-beta)gi|30691619|ref|NP_174314.2| elongation factor 1-beta / EF-1-beta [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Elongation factor 1-beta 1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | elongation factor 1-beta / EF-1-beta | chr1:10639270-10640499 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • elongation factor 1-beta like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Elongation factor 1-delta 1 (EF-1-delta 1) (Elongation factor 1B-beta 1) (eEF-1B beta 1) [nr-271106-contam.fasta]
  • translation elongation factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | chr1:10639286-10640515 FORWARD LENGTH=231 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: eukaryotic translation elongation factor 1 complex [ISS]
    plasma membrane [IDA]
    Biological Process: response to cadmium ion [IEP]
    translational elongation [ISS]
    Molecular Function: translation elongation factor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFPNLNSD AGLKKLDEHL LTRSYITGYQ ASKDDITVFA ALAKPPTSQY VNASRWYNHI  60
   61 DALLRISGVS AEGSGVIVEG SAPITEEAVA TPPAADSKDA AADEEDDDDV DLFGEETEEE 120
  121 KKAAEERAAS VKASTKKKES GKSSVLIDIK PWDDETDMKK LEEAVKSIQM EGLFWGASKL 180
  181 VPVGYGIKKL QILCTIVDDL VSIDTMIEEQ LTVEPINEYV QSCDIVAFNK I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] PSI-BLAST 6.39794 STRUCTURE OF GLUTATHIONE S-TRANSFERASE III IN APO FORM
    2 View Details [94..231] PSI-BLAST 36.154902 SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR DOMAIN FROM HUMAN ELONGATION FACTOR-ONE BETA, NMR, 20 STRUCTURES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.30738165079783 bayes_pls_golite062009
  • transferase activity
    		•  1.05573069897577 bayes_pls_golite062009
  • catalytic activity
    		•  0.963623964325467 bayes_pls_golite062009
  • protein binding
    		•  0.816387415768278 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.46030380837916 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  0.44372379417457 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.385619646192102 bayes_pls_golite062009
  • glutathione transferase activity
    		•  0.20688408808374 bayes_pls_golite062009
  • DNA binding
    		•  0.175092771820973 bayes_pls_golite062009
    2
    Term Confidence Notes
  • translation elongation factor activity
    		•  12.3173391557088 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  7.81664120156021 bayes_pls_golite062009
  • translation regulator activity
    		•  7.77673515271111 bayes_pls_golite062009
  • actin binding
    		•  3.32293986705361 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.89895269798148 bayes_pls_golite062009
  • binding
    		•  2.68915238463415 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.61354904861592 bayes_pls_golite062009
  • protein binding
    		•  0.897731859503126 bayes_pls_golite062009
  • GTPase regulator activity
    		•  0.398118288595674 bayes_pls_golite062009
  • guanyl-nucleotide exchange factor activity
    		•  0.315265787470263 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  0.135573965021144 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle