Protein Overview: TT16_ARATH

General Information:
Name(s) found:	TT16_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|42573453\|ref\|NP_974823.1\| TT16 (TRANSPARENT TESTA16); transcription factor [Arabidopsis thaliana] [NCBI NR] gi\|27151709\|sp\|Q8RYD9.1\|TT16_ARATH RecName: Full=Protein TRANSPARENT TESTA 16; AltName: Full=Arabidopsis BSISTER MADS-box protein [NCBI NR] gi\|19578309\|emb\|CAC85664.1\| putative MADS-domain transcription factor [Arabidopsis thaliana] [NCBI NR] Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1 [Swiss-Prot] (Q8RYD9) TRANSPARENT TESTA 16 protein (Arabidopsis BSISTER MADS box protein) [athaliana3702.FASTAC.txt] putative MADS-domain transcription factor [Arabidopsis thaliana]gi\|27151709\|sp\|Q8RYD9\|TT16_ARATH TRANSPARENT TESTA 16 protein (Arabidopsis BSISTER MADS box protein)gi\|42573453\|ref\|NP_974823.1\| MADS-box protein, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Splice Isoform 1 of TRANSPARENT TESTA 16 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: AGL32, ABS, TT16 \| TT16 (TRANSPARENT TESTA16); transcription factor \| chr5:7836445-7838343 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] TRANSPARENT TESTA 16 protein (Arabidopsis BSISTER MADS-box protein) [nr-271106-contam.fasta] putative MADS-domain transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta] TT16 (TRANSPARENT TESTA16); transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: TT16, ABS, AGL32 \| K-box region and MADS-box transcription factor family protein \| chr5:7836442-7838340 FORWARD LENGTH=252 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
Organism:	Arabidopsis thaliana
Length:	252 amino acids
Gene Ontology:
Cellular Component:	nucleus [IEA]
Biological Process:	regulation of cell shape [IMP] seed development [IMP] ovule development [IMP]
Molecular Function:	transcription factor activity [IMP][ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE  60
   61 QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET CNLELRLRPF HGHDLASIPP 120
  121 NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ 180
  181 QAGIDTKPGE YQQFIEQLQC YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ 240
  241 PNLQNDPTAQ ND

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..78]	PSI-BLAST	20.39794	Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
2	View Details	[79..252]	Pfam	5.09691	No description for PF01486.8 was found. No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.84

Protein Overview: TT16_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: