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Protein Overview: gi|15237977, gi|...

General Information:
Name(s) found: gi|9759434 [NCBI NR]
gi|15237977 [NCBI NR]
Description(s) found:
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  • gi|9759434|dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15237977|ref|NP_199503.1| intron maturase, type II family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9FJR9) Similarity to maturase-related protein [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15237977|ref|NP_199503.1| intron maturase, type II family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Intron maturase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | intron maturase, type II family protein | chr5:19070895-19073102 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / RNA-directed DNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Intron maturase, type II family protein | chr5:19053668-19055875 FORWARD LENGTH=735 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Intron maturase, type II family protein OS=Arabidopsis thaliana GN=At5g46920 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 735 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA splicing [IEA][ISS]
    RNA-dependent DNA replication [IEA][ISS]
    Molecular Function: RNA-directed DNA polymerase activity [IEA][ISS]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRSFSVLGP YKWLKPSSTY TNVYCFVTNP PLISNPNNGS AIFRYLSYFA PQQRRQQQQA  60
   61 PDPDDPANLL KEDGVSLCSQ MWLENFKEPD KTATNLTSYL RRFELWVLAY QKVCCDELGA 120
  121 YVPRSSIQRS ALENLLALRN SVLDDRFKWG SRLDFYIKSP RDKTDYESLS KRKIKAILTT 180
  181 TQPTPFQDRI VQEVLLMILE PIYESRFSQK SFAFRPGRTA HTVLRVIRRN FAGYLWYVKG 240
  241 DLSVVLDGMK VGFVISSLMR DVRDKKVIDL IKSALVTPVV TSKVEDGEKK KTKKRKYQKK 300
  301 RVLAEDEPKP DPYWLETFFG FAPEEAGKSP QWGHCGILSP LLVNVCLDEL DRWMETKVKD 360
  361 FYRPSKSDVI WNNPEGEADQ GNTSWPEFVP TSGPDKTRKM DYVRYGGHIL IGVRGPRADA 420
  421 ATLRKELIEF VDQKYMLRLD NENLPIEHIT KGIMFLDHVL CRRVVYPTLR YTATGGKIIS 480
  481 EKGVGTLLSV TASLKQCIKQ FRKLLFIKGD RDPDPQPCFR MFHATQAHTN NQMNKFLTTI 540
  541 AEWYRFADNR KKIVNFCSYI IRGSLAKLYA AKYKLRSRAK VYKFANRNLS LPLLQKKGQS 600
  601 PEYQNLLRMG LAESVDGLVY TRMSLVPETD YSPFPGNWRP EHEKFLIEYL TLDEPKTLEE 660
  661 QKRFIREKGL VSPQDYTSML VWNYKRNAIP MDQVSILKDQ PFLLGSSSTY NRDNDDQKNK 720
  721 EEDEDSEDGL RIARM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..545] FFAS03 1.8 Crystal structure of RNA-dependent RNA Polymerase 3D from human rhinovirus serotype 16
    2 View Details [546..640] MSA 2.142987 View MSA. No confident structure predictions are available.
    3 View Details [641..735] MSA 2.047997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.455736130840876 bayes_pls_golite062009
  • transferase activity
    		•  0.1348265745695 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.0290819848545603 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle