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Protein Overview: RPI3_ARATH

General Information:
Name(s) found: RPI3_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6175179|gb|AAF04905.1|AC011437_20 putative ribose 5-phosphate isomerase [Arabidopsis thaliana] [NCBI NR]
  • gi|23296784|gb|AAN13169.1| putative ribose 5-phosphate isomerase [Arabidopsis thaliana] [NCBI NR]
  • gi|15229349|ref|NP_187130.1| ribose 5-phosphate isomerase-related [Arabidopsis thaliana] [NCBI NR]
  • gi|15027857|gb|AAK76459.1| putative ribose 5-phosphate isomerase [Arabidopsis thaliana] [NCBI NR]
  • gi|12322865|gb|AAG51427.1|AC009465_27 putative ribose 5-phosphate isomerase; 91580-90750 [Arabidopsis thaliana] [NCBI NR]
  • Probable ribose-5-phosphate isomerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPI3 PE=1 SV=1 [Swiss-Prot]
  • (Q9S726) Putative ribose 5-phosphate isomerase [athaliana3702.FASTAC.txt]
  • putative ribose 5-phosphate isomerase [Arabidopsis thaliana]gi|23296784|gb|AAN13169.1| putative ribose 5-phosphate isomerase [Arabidopsis thaliana]gi|15027857|gb|AAK76459.1| putative ribose 5-phosphate isomerase [Arabidopsis thaliana]gi|12322865|gb|AAG [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribose 5-phosphate isomerase-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribose 5-phosphate isomerase-related | chr3:1313371-1314201 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative ribose 5-phosphate isomerase; 91580-90750 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative ribose 5-phosphate isomerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ribose-5-phosphate isomerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribose 5-phosphate isomerase, type A protein | chr3:1313365-1314195 FORWARD LENGTH=276 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative ribose 5-phosphate isomerase OS=Arabidopsis thaliana GN=F7O18.28 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 276 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    chloroplast envelope [IDA]
    chloroplast thylakoid membrane [IDA]
    thylakoid [IDA]
    Biological Process: reductive pentose-phosphate cycle [NAS]
    defense response to bacterium [IEP]
    Molecular Function: ribose-5-phosphate isomerase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI  60
   61 KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK RTEEQARSLG IPLVGLDTHP 120
  121 RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP 180
  181 VEVVQFCWNF NLIRLQDLFK EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA 240
  241 AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..276] PSI-BLAST 56.39794 D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribose-5-phosphate isomerase activity
    		•  2.23318567990318 bayes_pls_golite062009
  • 6-phosphogluconolactonase activity
    		•  1.97756803122763 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.15193795385115 bayes_pls_golite062009
  • binding
    		•  0.867979574569016 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  0.61058174487002 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.527142798518238 bayes_pls_golite062009
  • DNA binding
    		•  0.465566131334457 bayes_pls_golite062009
  • catalytic activity
    		•  0.424959044318554 bayes_pls_golite062009
  • glucosamine-6-phosphate deaminase activity
    		•  0.111185777194415 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  0.075853172283603 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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