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Protein Overview: gi|6850833, gi|1...

General Information:
Name(s) found: gi|6850833 [NCBI NR]
gi|15233107 [NCBI NR]
gi|11357716 [NCBI NR]
Description(s) found:
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  • gi|6850833|emb|CAB71072.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15233107|ref|NP_191701.1| transcription factor-related [Arabidopsis thaliana] [NCBI NR]
  • pir||T47934 hypothetical protein F2A19.20 - Arabidopsis thaliana [NCBI NR]
  • (Q9M322) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11357716|pir||T47934 hypothetical protein F2A19.20 - Arabidopsis thalianagi|15233107|ref|NP_191701.1| transcription factor-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription factor-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transcription factor-related | chr3:22738210-22742562 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 566 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFVPNDPK SDLKLKVQTH NIKSQKYTKE GSNKPPWLNL TSKQGRSHIF EFENYPDMHA  60
   61 CRDFITKALA KCEEEPNKLV VLTPAEQLSM AEFELRFKLL RENSELQKLH KQFVESKVLT 120
  121 EDEFWSTRKK LLGKDSIRKS KQQMGLKSMM VSGIKPSTDG RTNRVTFNLT SEIIFQIFAE 180
  181 KPAVRQAFIN YVPKKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL 240
  241 AQEARQKMRR VDPTLDMDAD EGDDYTHLMD HGIQRDGTND IIEPQNDQLK RSLLQDLNRH 300
  301 AAVVLEGRCI IDVQSEDTRI VAEALTRAKQ VSKADGEITK DANQERLERM SRATEMEDLQ 360
  361 APQNFPLAPL SIKDPRDYFE SQQGNILSEP RGAKASKRNV HEAYGLLKES ILVIRMTGLS 420
  421 DPLIKPEVSF EVFSSLTRTI STAKNILGKN PQESFLDRLP KSTKDEVIHV GKLKDAMSNT 480
  481 YSLLDVSYGI LLQIFFSEVV VETYSIWSSV YGFRNIIPNV NQAMKQSVQS DLRHQVSLLV 540
  541 RPMQQALDAA FQHYESDLQR RTAKIT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] PSI-BLAST 15.69897 Solution structure of the N-terminal PH/PTB domain of the TFIIH P62 subunit
    2 View Details [83..147] PSI-BLAST 13.045757 No description for 2diiA was found.
    3 View Details [148..263] FFAS03 1.97 Solution structure of the BSD domain of human Synapse associated protein 1
    4 View Details [264..317] deduced N/A No confident structure predictions are available.
    5 View Details [318..486] MSA 1.034995 View MSA. No confident structure predictions are available.
    6 View Details [487..566] MSA 2.034993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.597587183571285 bayes_pls_golite062009
  • protein binding
    		•  0.29116370406325 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle