| Protein: | gi|6850833, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 566 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6850833, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
677.0 | [0..1] | [564..31] |
|
Region A: Residues: [1-82] |
1 11 21 31 41 51
| | | | | |
1 MLLFVPNDPK SDLKLKVQTH NIKSQKYTKE GSNKPPWLNL TSKQGRSHIF EFENYPDMHA 60
61 CRDFITKALA KCEEEPNKLV VL
|
| Detection Method: |  |
| Confidence: | 15.69897 |
| Match: | 1pfjA |
| Description: | Solution structure of the N-terminal PH/PTB domain of the TFIIH P62 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.597587183571285 | bayes_pls_golite062009 |
| protein binding | 0.29116370406325 | bayes_pls_golite062009 |
|
Region A: Residues: [83-147] |
1 11 21 31 41 51
| | | | | |
1 TPAEQLSMAE FELRFKLLRE NSELQKLHKQ FVESKVLTED EFWSTRKKLL GKDSIRKSKQ 60
61 QMGLK
|
| Detection Method: | |
| Confidence: | 13.045757 |
| Match: | 2diiA |
| Description: | No description for 2diiA was found. |
|
Region A: Residues: [148-263] |
1 11 21 31 41 51
| | | | | |
1 SMMVSGIKPS TDGRTNRVTF NLTSEIIFQI FAEKPAVRQA FINYVPKKMT EKDFWTKYFR 60
61 AEYLYSTKNT AVAAAEAAED EELAVFLKPD EILAQEARQK MRRVDPTLDM DADEGD
|
| Detection Method: | |
| Confidence: | 1.97 |
| Match: | 1x3aA |
| Description: | Solution structure of the BSD domain of human Synapse associated protein 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [264-317] |
1 11 21 31 41 51
| | | | | |
1 DYTHLMDHGI QRDGTNDIIE PQNDQLKRSL LQDLNRHAAV VLEGRCIIDV QSED
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [318-486] |
1 11 21 31 41 51
| | | | | |
1 TRIVAEALTR AKQVSKADGE ITKDANQERL ERMSRATEME DLQAPQNFPL APLSIKDPRD 60
61 YFESQQGNIL SEPRGAKASK RNVHEAYGLL KESILVIRMT GLSDPLIKPE VSFEVFSSLT 120
121 RTISTAKNIL GKNPQESFLD RLPKSTKDEV IHVGKLKDAM SNTYSLLDV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [487-566] |
1 11 21 31 41 51
| | | | | |
1 SYGILLQIFF SEVVVETYSI WSSVYGFRNI IPNVNQAMKQ SVQSDLRHQV SLLVRPMQQA 60
61 LDAAFQHYES DLQRRTAKIT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
