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Protein Overview: SO3272

General Information:
Name(s) found: SO3272 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • ISSod6c transposase [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLMLTDAR WEKLFHLMKS TGRVYDKPEH RQTFEGILYR LRTGIPWRDL PKEFGHWSTV  60
   61 FRRFHLWSKK GVLAHLFKAL ANLADIEWVF IDGSIVRAHQ HSAGAATLSN ESIGKSRGGH 120
  121 STKIHLAVDS GGLPIYFELS EGQKHDITHA PSLIEHLKQV DTVIADKGYD SDAFRELIAN 180
  181 KGGKSVIPRR RYKNTPQERV DWCLYRYRHL VENAFGRIKH YRAISTRYDK LARNYASMVS 240
  241 LAFMLMWLPM YC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..252] FFAS03 1.63 Transposase inhibitor (Tn5 transposase)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.53924789709051 bayes_pls_golite062009
  • nuclease activity
    		•  1.33447740033502 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.23347009562032 bayes_pls_golite062009
  • hydrolase activity
    		•  1.22075366957547 bayes_pls_golite062009
  • exonuclease activity
    		•  1.20458535230258 bayes_pls_golite062009
  • transposase activity
    		•  0.965908684749648 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.330313608754008 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.26323966197813 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.248165509716873 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle