element search_program_info
diagram proxl-xml-v1.4_diagrams/proxl-xml-v1.4_p55.png
properties
content complex
children search_programs annotation_cutoffs_on_import default_visible_annotations annotation_sort_order
used by
element proxl_input
annotation
documentation
Information relating to the search program(s) used to generate the peptide spectrum matches and scores/annotations for PSMs and peptides.
source <xs:element name="search_program_info">
 
<xs:annotation>
   
<xs:documentation>Information relating to the search program(s) used to generate the peptide spectrum matches and scores/annotations for PSMs and peptides.</xs:documentation>
 
</xs:annotation>
 
<xs:complexType>
   
<xs:sequence>
     
<xs:element ref="search_programs"/>
     
<xs:element ref="annotation_cutoffs_on_import" minOccurs="0">
       
<xs:annotation>
         
<xs:documentation>Optional, but recommended, cutoffs to use when importing data. E.g., limit imported PSMs to those with a q-value of 0.05 or better. Data not meeting these cutoffs will not be imported into the database--helps to prevent the database filling up with unwanted (and unneeded) data.</xs:documentation>
       
</xs:annotation>
     
</xs:element>
     
<xs:element ref="default_visible_annotations"/>
     
<xs:element ref="annotation_sort_order" minOccurs="0">
       
<xs:annotation>
         
<xs:documentation>The sort order applied to filterable annotations when presenting the default listing of PSMs or peptides. The order will be in the order the annotations appear here. E.g. if "q-value" is listed first and "p-value" is listed next, the items will be sorted on q-value first, then, sorted on p-value in the case of ties. Note: all annotation types listed here must be filterable. If this element is not present, no default sorting will be applied to listed PSMs or peptides in ProXL.</xs:documentation>
       
</xs:annotation>
     
</xs:element>
   
</xs:sequence>
 
</xs:complexType>
</xs:element>


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