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View Structure Prediction Details

Protein: gi|50934037, gi|...
Organism: Oryza sativa Japonica Group
Length: 608 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50934037, gi|....

Description E-value Query
Range
Subject
Range
gi|92874462 - gi|92874462|gb|ABE82727.1| Mitochodrial transcription termination factor-related [Medicago truncatul...
439.0 [0..20] [588..38]
gi|42569224 - gi|42569224|ref|NP_179763.2| EMB2219 (EMBRYO DEFECTIVE 2219); transferase [Arabidopsis thaliana]
424.0 [0..29] [602..36]
gi|52076947, gi|... - gi|52076947|dbj|BAD45958.1| hypothetical protein [Oryza sativa Japonica Group], gi|125606623|gb|EAZ4...
328.0 [0..17] [566..32]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATLPPSH HRLHLHLHLH TPKPSPPRRL RLAAAAAASR LQNPTTTHYP NLPPPAPPPS  60
   61 TSLVAAEEAS LAPRRTYRFP GSVPSSPTLP DTADGGLAAA AAVADDAVLR RALEVRRAVA 120
  121 GEVLVAALRG GKVGGLTYIR NLTSRMAPFV DRVVVEAAAM RRDRPELAHQ SFNARARVYI 180
  181 EESGLVALVK WFKHN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMTYPQIAKV VCSSSGNLEK VRRMIKWLRS IHVKGEYLGR VLAKGDTFLS RSFEELEEII  60
   61 YYMESCGVRK DWIGHVVGRC PQLLNLSMDE LETRVRFYTD MGMNDNDFGT MVYDYPKALG 120
  121 FFSLEEMNSK VQYLKEFGLS TDELGKLMAF KPQLMACSIE ERWKPLVKYL YHLN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [370-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISRDGMKRML VVQPTIFCLD LETVIAPKVQ FLQDIGVRSD AVGGVLVKFP PVLTYSLYKK  60
   61 IRPVVIFLMT KAAVKQEDIG KVIALDPQLL GCSIVRKLEV SVKYLRSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [478-608]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIYHFVLGQM VTDFPTLLRY NVDVLRPKYQ YLRRVMVRPL IDLVEFPRFF SYSLEDRIVP  60
   61 RHQTLVENRI NMKLRYMLTG SDEDFSQRVR EAVERRARFE AGNVEASDSQ ATTDGAEATA 120
  121 PASQDGWEAD T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle