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View Structure Prediction Details

Protein: gi|113536682, gi...
Organism: Oryza sativa Japonica Group
Length: 652 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113536682, gi....

Description E-value Query
Range
Subject
Range
gi|50924552, gi|... - gi|50924552|ref|XP_472636.1| OSJNBa0058G03.4 [Oryza sativa (japonica cultivar-group)], gi|32482927|e...
890.0 [0..1] [652..1]
CB60B_ARATH - Calmodulin-binding protein 60 B OS=Arabidopsis thaliana GN=CBP60B PE=2 SV=1
848.0 [0..8] [648..2]
gi|7489107, gi|1... - pir||T03793 calmodulin-binding protein TCB60 - common tobacco, gi|1698548|gb|AAB37246.1| calmodulin...
767.0 [0..112] [652..16]

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Predicted Domain #1
Region A:
Residues: [1-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRQGRSLQR SGSKRVLDPT GGGGGDDDDH AAKRPRVPAL ASVIVEALKV DSLQKLCSSL  60
   61 EPILRRVVSE EVERALAKLG PARIQGRSSP KRIEGPDGRN LQLKFTTRLS LPLFTGGKVE 120
  121 GEQGAAIHVV LLDANTGVAV TSGPESCAKL DVLVLEGDFN NEEDEDWTEE EFESHIVKER 180
  181 EGKRPLLTGD LQVTLKEGVG TIGELIFTDN S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [212-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWIRSRKFRL GLRVAPGSFE GIRVREAKTE AFTVKDHRGE LYKKHYPPAL KDDVWRLEKI  60
   61 GKDGAFHKKL NASGIYTVED FLQLLVKDQQ RLRSIL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [308-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGMSNKMWE SLVEHAKTCV LSGKHYVYYA IDSRNVGAIF NNIYEFTGLI ADDQFISAEN  60
   61 LTDNQKIYAD GLVKKAYEDW MHVVEY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [394-549]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGKALLSFKQ KKKSVTTRSD TAAAATNSPV SYGSSNTHKQ LSQPAKAGQT STGTTSEDGS  60
   61 TSAYNGNQAG RYAVNSQSIP ANVTTQYERS SLTPESQFNG SALQNQVSRG SNILALGPPQ 120
  121 QQHQQNFEFS ALGGQSMQPT GLNPFDDWSQ PQENRS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [550-652]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVDDYLMEEI RMRSHEILEN EEMQQMLRIL SMGGASTNLT EDGFAFPNYM PSTPPNFNFG  60
   61 DDRARPPGKA VVGWLKIKAA MRWGIFVRKK AAERRAQLVE LED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle