| Protein: | pkd-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 716 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pkd-2.
| Description | E-value | Query Range |
Subject Range |
|
|
483.0 | [0..14] | [716..394] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MNYGAADERW ANPPQPVAAA EHGPSFDHSM VSEEYEHDKK KNPAQKEGIS FSQALLASGH 60
61 EKSDGKIKLT ARSFMEVGGY AVFLIVLVYV AFAQNSIQSY YYSKVMSDLF VASTGASGAP 120
121 AFGSCTSMDN IWDWLSQVLI PGIYWTETSN STDNENMI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [159-634] |
1 11 21 31 41 51
| | | | | |
1 YYENRLLGEP RIRMLKVTND SCTVMKSFQR EIKECFANYE EKLEDKTMVG DGSVDAFIYA 60
61 TAKELENLKT VGTIASYGGG GFVQRLPVAG STEAQSAIAT LKANRWIDRG SRAIIVDFAL 120
121 YNANINLFCV VKLLFELPAS GGVITTPKLM TYDLLTYQTS GGTRMMIFEG IFCGFILYFI 180
181 FEELFAIGRH RLHYLTQFWN LVDVVLLGFS VATIILSVNR TKTGVNRVNS VIENGLTNAP 240
241 FDDVTSSENS YLNIKACVVF VAWVKVFKFI SVNKTMSQLS STLTRSAKDI GGFAVMFAVF 300
301 FFAFAQFGYL CFGTQIADYS NLYNSAFALL RLILGDFNFS ALESCNRFFG PAFFIAYVFF 360
361 VSFILLNMFL AIINDSYVEV KAELARKKDG EGILDWFMNK VRGLTKRGKR PDAPGEDATY 420
421 EDYKLMLYRA GYAEKDINEA FTRFNVTSMT EHVPEKVAED IADEVARMTE QKRNYM
|
| Detection Method: | |
| Confidence: | 48.045757 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [635-716] |
1 11 21 31 41 51
| | | | | |
1 ENHRDYANLN RRVDQMQESV FSIVDRIEGV NATLQTIEKQ RVQQQDGGNL MDLSALLTNQ 60
61 VRNRESAARR PTITSIADKK EE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
