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Protein Overview: gi|24372411, gi|...

General Information:
Name(s) found: gi|24372411 [NCBI NR]
gi|24346377 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24372411|ref|NP_716453.1| outer membrane efflux family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346377|gb|AAN53898.1|AE015526_9 outer membrane efflux family protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 472 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transport [ISSLink to PubMed article]
    Molecular Function: efflux transmembrane transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNKVLMHQN KLRTLKLSVI AISIALLSGC GALMRSDFEP PALQVPEQWQ HTAVNSQVSL  60
   61 DPWWQKFNQP ELNQLISQVL SSNNDLTIAT LTLQKARLQA GLARDELYPQ LSSNNAASVN 120
  121 KPLEGGSSSK AYKANLSVSY EVDLWGKVSA NIDQAQWTAL ASVEDRESTA HSLVATTASL 180
  181 YWQIGYLHQR IELSNKSIEY SRQTLALTER QYASGAVTEL NVLESLRSLA GQEAAHSQLL 240
  241 QQLVEAENAL AILLNRAPGQ VAVEIKQLPD SAVPEIGVGI PADLIGRRPD VKAALYQLRS 300
  301 ALASKNATYA SYFPSLSLTG SVGESTSELK ELLRNPVGSL GAGLMLPFLQ WNQMQINNDL 360
  361 ADIDYQTAIV NYRKTLYSAF EDVDNAISAK QQYAYQGEKL EQQFSAAAQA EAIYESQYRH 420
  421 GAIGIQNWID AQENRRSAEA ALLENRYNQL TAQATLYQAL GGSDIAPLLA DN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..472] PSI-BLAST 68.69897 Crystal structure of the drug-discharge outer membrane protein, OprM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • drug transmembrane transporter activity
    		•  4.81710579303325 bayes_pls_golite062009
    		• 4.35844117790122 bayes_pls_golite062009
    		• 4.29225678658868 bayes_pls_golite062009
  • transporter activity
    		•  4.2806100513341 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.91628575119399 bayes_pls_golite062009
  • porin activity
    		•  0.960340223825989 bayes_pls_golite062009
  • binding
    		•  0.666039242029224 bayes_pls_golite062009
  • channel activity
    		•  0.517545908208242 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.517545908208242 bayes_pls_golite062009
  • efflux transmembrane transporter activity
    		•  0.381147202210091 bayes_pls_golite062009
  • protein binding
    		•  0.0827883348198969 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle