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Protein Overview: gi|24350304, gi|...

General Information:
Name(s) found: gi|24375456 [NCBI NR]
gi|24350304 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24375456|ref|NP_719499.1| OmpA family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350304|gb|AAN56943.1|AE015827_15 OmpA family protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 228 amino acids

    Gene Ontology:
    Cellular Component: cell outer membrane [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKPSIKSLP ASKLAIVVIT SALIASGCTT VNPYTNEQQT AKATTGALIG AVAGAAVGVA  60
   61 SSSKSDRGKG ALIGAASGAA LGGGIGYYMD VQETKLRQQL ASTGVSVTRS GDNIILNMPN 120
  121 EVTFGVDQTE LSDGAKRVLN SVALVAKEYS KTQLNVLGYT DSSGSDSYNL RLSQVRASEV 180
  181 GNYLMSKGVA SARVKSKGMG EASPIASNAN AEGRAQNRRV EIVLTPTG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] PSI-BLAST 13.0 Outer membrane protein A (OMPA) transmembrane domain
    2 View Details [103..228] PSI-BLAST 28.30103 No description for 2hqsH was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • porin activity
    		•  3.72603691775929 bayes_pls_golite062009
  • wide pore channel activity
    		•  2.56764837317779 bayes_pls_golite062009
  • channel activity
    		•  0.500502774665998 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.500502774665998 bayes_pls_golite062009
  • transporter activity
    		•  0.32956132877646 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.31625101261287 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle